miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 5' -58.8 NC_004684.1 + 45219 0.66 0.577953
Target:  5'- cGCGUCCAUgCgGCGCuugguGCUGGUcAGGc -3'
miRNA:   3'- aUGCAGGUA-GgCGCG-----UGGCCGuUCCa -5'
19248 5' -58.8 NC_004684.1 + 7327 0.66 0.577953
Target:  5'- cACGggccgCCGggCCGCGCGCCacgaguGCGAGGc -3'
miRNA:   3'- aUGCa----GGUa-GGCGCGUGGc-----CGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 25388 0.66 0.566338
Target:  5'- cUACG-CCG-CCGCGCACagCGGCGgccaguaccaaugGGGUg -3'
miRNA:   3'- -AUGCaGGUaGGCGCGUG--GCCGU-------------UCCA- -5'
19248 5' -58.8 NC_004684.1 + 51564 0.66 0.556879
Target:  5'- cUGCG-CCAgugcgcgCUGCGCGgCGGCGaccGGGUg -3'
miRNA:   3'- -AUGCaGGUa------GGCGCGUgGCCGU---UCCA- -5'
19248 5' -58.8 NC_004684.1 + 16215 0.66 0.556879
Target:  5'- cGCgGUCCAUggcCCgGCGCAUCGGCcacaccGAGGa -3'
miRNA:   3'- aUG-CAGGUA---GG-CGCGUGGCCG------UUCCa -5'
19248 5' -58.8 NC_004684.1 + 33487 0.66 0.546425
Target:  5'- cGCGcCCAuaucugUCCGCGCccACCGGCAc--- -3'
miRNA:   3'- aUGCaGGU------AGGCGCG--UGGCCGUucca -5'
19248 5' -58.8 NC_004684.1 + 43192 0.66 0.546425
Target:  5'- gAUGUCgGgcaCCGCagGCACCGGCAuuuuGGg -3'
miRNA:   3'- aUGCAGgUa--GGCG--CGUGGCCGUu---CCa -5'
19248 5' -58.8 NC_004684.1 + 21852 0.66 0.546425
Target:  5'- -cUGUCCccCgGUGCGCCGGUcgaaGAGGUg -3'
miRNA:   3'- auGCAGGuaGgCGCGUGGCCG----UUCCA- -5'
19248 5' -58.8 NC_004684.1 + 49872 0.66 0.546425
Target:  5'- gGCGguUCCAcaggauggcgaaUCCGuCGCGCCGGaCAuGGUg -3'
miRNA:   3'- aUGC--AGGU------------AGGC-GCGUGGCC-GUuCCA- -5'
19248 5' -58.8 NC_004684.1 + 33917 0.66 0.546425
Target:  5'- cGCGUCCA-CCGCaGCcCCGcCGAGGc -3'
miRNA:   3'- aUGCAGGUaGGCG-CGuGGCcGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 58926 0.66 0.536033
Target:  5'- gGCuGUCCAgguuggCGCGCACCGGgGAGu- -3'
miRNA:   3'- aUG-CAGGUag----GCGCGUGGCCgUUCca -5'
19248 5' -58.8 NC_004684.1 + 40264 0.67 0.525711
Target:  5'- cACGUCgAUCaGCGUcCCGGCAAcGGc -3'
miRNA:   3'- aUGCAGgUAGgCGCGuGGCCGUU-CCa -5'
19248 5' -58.8 NC_004684.1 + 42362 0.67 0.525711
Target:  5'- cACGUCgAUgCCGCcuccagcuGCACCGGCGcugagcgcgaccGGGUu -3'
miRNA:   3'- aUGCAGgUA-GGCG--------CGUGGCCGU------------UCCA- -5'
19248 5' -58.8 NC_004684.1 + 1773 0.67 0.519554
Target:  5'- --aGUCCAUggaGCGCGCCaacagcugcgagaagGGCGAGGUc -3'
miRNA:   3'- augCAGGUAgg-CGCGUGG---------------CCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 11641 0.67 0.515465
Target:  5'- -uCGUCC-UCUGCGgGCCGGUgcaacGGGGa -3'
miRNA:   3'- auGCAGGuAGGCGCgUGGCCG-----UUCCa -5'
19248 5' -58.8 NC_004684.1 + 37629 0.67 0.505301
Target:  5'- aACG-CCGUCgGUGCGCUGGCcauGGc -3'
miRNA:   3'- aUGCaGGUAGgCGCGUGGCCGuu-CCa -5'
19248 5' -58.8 NC_004684.1 + 7398 0.67 0.495224
Target:  5'- -cCGUCCAauaCUGCgGCGCgugCGGCAAGGUc -3'
miRNA:   3'- auGCAGGUa--GGCG-CGUG---GCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 45653 0.67 0.492219
Target:  5'- cGCGgccgaCCAUCUGCGCguagagguuuuuugACCGGguAGGc -3'
miRNA:   3'- aUGCa----GGUAGGCGCG--------------UGGCCguUCCa -5'
19248 5' -58.8 NC_004684.1 + 43285 0.67 0.485239
Target:  5'- cACGUCC-UUgGCGaUGCCGcGCGAGGUc -3'
miRNA:   3'- aUGCAGGuAGgCGC-GUGGC-CGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 38734 0.67 0.475351
Target:  5'- cUGCGUcaccgCCGUCuCGCgGCACCGGaacGGGUa -3'
miRNA:   3'- -AUGCA-----GGUAG-GCG-CGUGGCCgu-UCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.