miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19249 3' -60.1 NC_004684.1 + 66429 0.79 0.089856
Target:  5'- cCCgGAGuCGccaaUGACCCGCAGGCCCGCgaaGCGa -3'
miRNA:   3'- -GG-CUC-GC----ACUGGGCGUCUGGGCG---UGC- -5'
19249 3' -60.1 NC_004684.1 + 66064 0.66 0.570219
Target:  5'- gCGuGCGUGAUcccccagCCGUGGAaCCGCAUGu -3'
miRNA:   3'- gGCuCGCACUG-------GGCGUCUgGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 65813 0.74 0.201813
Target:  5'- aCCGGGCagGUGACCCGgAGGCaCCG-GCGg -3'
miRNA:   3'- -GGCUCG--CACUGGGCgUCUG-GGCgUGC- -5'
19249 3' -60.1 NC_004684.1 + 64657 0.69 0.382559
Target:  5'- gCCGAacGUGUGGCCgUGCGGugUgGCGCa -3'
miRNA:   3'- -GGCU--CGCACUGG-GCGUCugGgCGUGc -5'
19249 3' -60.1 NC_004684.1 + 63539 0.67 0.489435
Target:  5'- gCGGGCGUGGCgcucggccuccucggCCGCuGccaucagguccaucgGCCUGCGCGg -3'
miRNA:   3'- gGCUCGCACUG---------------GGCGuC---------------UGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 63288 0.67 0.520797
Target:  5'- gCCGGGCGUaucCCUGC--ACCaCGCGCGa -3'
miRNA:   3'- -GGCUCGCAcu-GGGCGucUGG-GCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 63239 0.67 0.520797
Target:  5'- gCCGGGCGUcGGCCCgaGCAG-CuuGUccACGa -3'
miRNA:   3'- -GGCUCGCA-CUGGG--CGUCuGggCG--UGC- -5'
19249 3' -60.1 NC_004684.1 + 62946 0.69 0.366037
Target:  5'- aCGuGCGgccuccagcUGcGCCaGCAGGCCCGCGCGu -3'
miRNA:   3'- gGCuCGC---------AC-UGGgCGUCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 61602 0.68 0.453387
Target:  5'- gUCGAgGCGUcccGCCCGCAcACCaCGCACu -3'
miRNA:   3'- -GGCU-CGCAc--UGGGCGUcUGG-GCGUGc -5'
19249 3' -60.1 NC_004684.1 + 61443 0.66 0.575335
Target:  5'- aCCGGcGCGgccagguuggaccGCCCGguGGCCaGCGCGg -3'
miRNA:   3'- -GGCU-CGCac-----------UGGGCguCUGGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 60063 0.67 0.481731
Target:  5'- gUGGcGCGcGGCCCgGCGG-CCCGUGCGg -3'
miRNA:   3'- gGCU-CGCaCUGGG-CGUCuGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 59513 0.69 0.366037
Target:  5'- aCCGGGCGcG--UCGUAGGCCUGCGCa -3'
miRNA:   3'- -GGCUCGCaCugGGCGUCUGGGCGUGc -5'
19249 3' -60.1 NC_004684.1 + 59229 1.09 0.000559
Target:  5'- gCCGAGCGUGACCCGCAGACCCGCACGc -3'
miRNA:   3'- -GGCUCGCACUGGGCGUCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 58327 0.66 0.571242
Target:  5'- gCCGGGUcaUGgcgcGCCCGguGGCCCuGCugGc -3'
miRNA:   3'- -GGCUCGc-AC----UGGGCguCUGGG-CGugC- -5'
19249 3' -60.1 NC_004684.1 + 57617 0.66 0.571242
Target:  5'- aCGAGCGguacgGccagccACCCGguGACCuCGCGu- -3'
miRNA:   3'- gGCUCGCa----C------UGGGCguCUGG-GCGUgc -5'
19249 3' -60.1 NC_004684.1 + 57526 0.69 0.366037
Target:  5'- cCCGAgGCgGUGGCCCGCcu-CCagaGCGCGa -3'
miRNA:   3'- -GGCU-CG-CACUGGGCGucuGGg--CGUGC- -5'
19249 3' -60.1 NC_004684.1 + 57249 0.75 0.164682
Target:  5'- cCUGGGCGggcGGCaCCGUcGGCCCGCACa -3'
miRNA:   3'- -GGCUCGCa--CUG-GGCGuCUGGGCGUGc -5'
19249 3' -60.1 NC_004684.1 + 56618 0.68 0.417056
Target:  5'- gCCGucGCGgGugUCGCGGGCaCGCACGu -3'
miRNA:   3'- -GGCu-CGCaCugGGCGUCUGgGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 55882 0.68 0.462735
Target:  5'- aCCGAGCGUG-CCgGgAGuCCCaGCAgGc -3'
miRNA:   3'- -GGCUCGCACuGGgCgUCuGGG-CGUgC- -5'
19249 3' -60.1 NC_004684.1 + 54604 0.66 0.547853
Target:  5'- gCGGGgGUGccguuguccucguuGgCCGCAGGCgcagCCGCGCGg -3'
miRNA:   3'- gGCUCgCAC--------------UgGGCGUCUG----GGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.