miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 21616 0.66 0.609339
Target:  5'- aGGGCGAccgccuggagguGCGCCuGCCaaccgAGCAgg-CGCUCu -3'
miRNA:   3'- -UCCGCU------------UGUGG-CGG-----UCGUacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 39443 0.66 0.624478
Target:  5'- cGGCGAcguaccACGgUGCCAGCuccgggcgguagaugGUGUCGCcCa -3'
miRNA:   3'- uCCGCU------UGUgGCGGUCG---------------UACAGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 29856 0.66 0.609339
Target:  5'- cGGCGggUcaucGCCGCC-GCA-GUCGUg- -3'
miRNA:   3'- uCCGCuuG----UGGCGGuCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 9555 0.66 0.609339
Target:  5'- cGGGCGggUACCggcgGCCAGCAc--CGC-Cg -3'
miRNA:   3'- -UCCGCuuGUGG----CGGUCGUacaGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 53469 0.66 0.609339
Target:  5'- -uGCGAGcCGCCaGCCAGC-UGUCGaUCu -3'
miRNA:   3'- ucCGCUU-GUGG-CGGUCGuACAGCgAG- -5'
19250 5' -57.3 NC_004684.1 + 9451 0.66 0.609339
Target:  5'- -aGCGAGCACCGCaGGCG-GUCGg-- -3'
miRNA:   3'- ucCGCUUGUGGCGgUCGUaCAGCgag -5'
19250 5' -57.3 NC_004684.1 + 8044 0.66 0.609339
Target:  5'- uGGCGGuccucCAgCGCCAGCAggGUgCgGCUCa -3'
miRNA:   3'- uCCGCUu----GUgGCGGUCGUa-CA-G-CGAG- -5'
19250 5' -57.3 NC_004684.1 + 43685 0.66 0.62015
Target:  5'- cGGCGucgagguccGACACCGCCugGGCAgcuUGgaugCGCUg -3'
miRNA:   3'- uCCGC---------UUGUGGCGG--UCGU---ACa---GCGAg -5'
19250 5' -57.3 NC_004684.1 + 65837 0.66 0.62015
Target:  5'- cGGCGGcucacagguGCACCGCaugcgAGCGcggGUCGCgUCg -3'
miRNA:   3'- uCCGCU---------UGUGGCGg----UCGUa--CAGCG-AG- -5'
19250 5' -57.3 NC_004684.1 + 43799 0.66 0.652608
Target:  5'- cGGGUGAuacCACCGgCGGCgGUGuUCGCg- -3'
miRNA:   3'- -UCCGCUu--GUGGCgGUCG-UAC-AGCGag -5'
19250 5' -57.3 NC_004684.1 + 35809 0.66 0.656929
Target:  5'- cGGCGAcgguggucauucacgACGCCGCCAGCuucGaCGUa- -3'
miRNA:   3'- uCCGCU---------------UGUGGCGGUCGua-CaGCGag -5'
19250 5' -57.3 NC_004684.1 + 46408 0.66 0.641794
Target:  5'- uGGuCGGGucCACgGCCAGCAUGUCccgGCg- -3'
miRNA:   3'- uCC-GCUU--GUGgCGGUCGUACAG---CGag -5'
19250 5' -57.3 NC_004684.1 + 6367 0.66 0.641794
Target:  5'- cGGCGAugGCCugcgcguuGCgCAGCGUGUUGg-- -3'
miRNA:   3'- uCCGCUugUGG--------CG-GUCGUACAGCgag -5'
19250 5' -57.3 NC_004684.1 + 6023 0.66 0.630972
Target:  5'- cGGUGGccuuuAgGCCGCCAGCGccUCGCg- -3'
miRNA:   3'- uCCGCU-----UgUGGCGGUCGUacAGCGag -5'
19250 5' -57.3 NC_004684.1 + 33517 0.66 0.62015
Target:  5'- cGGGCGGugGCgGCUAuGCGggGUCGUa- -3'
miRNA:   3'- -UCCGCUugUGgCGGU-CGUa-CAGCGag -5'
19250 5' -57.3 NC_004684.1 + 40655 0.66 0.641794
Target:  5'- gGGGCcuGGCcCCGCCAGUcg--CGCUCg -3'
miRNA:   3'- -UCCGc-UUGuGGCGGUCGuacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 4662 0.66 0.62015
Target:  5'- cGGUGuACACCGuCCuGCGUGccuugcaGCUCa -3'
miRNA:   3'- uCCGCuUGUGGC-GGuCGUACag-----CGAG- -5'
19250 5' -57.3 NC_004684.1 + 42521 0.66 0.641794
Target:  5'- cGGCGcgcuCACCGCCguggucGGCGUGcugacggCGUUCg -3'
miRNA:   3'- uCCGCuu--GUGGCGG------UCGUACa------GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 50949 0.66 0.630972
Target:  5'- cAGGCGcACGauggugugCGCCAGCAcGUCGUa- -3'
miRNA:   3'- -UCCGCuUGUg-------GCGGUCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 11986 0.66 0.630972
Target:  5'- cGGCG-GCACCGaCGGCAUGacccCGCa- -3'
miRNA:   3'- uCCGCuUGUGGCgGUCGUACa---GCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.