miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 59796 1.1 0.000601
Target:  5'- gAGGCGAACACCGCCAGCAUGUCGCUCa -3'
miRNA:   3'- -UCCGCUUGUGGCGGUCGUACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 10258 0.83 0.058937
Target:  5'- gAGGCGAACcagccgcgccaguGCUGCCAGCG-GUCGCUCc -3'
miRNA:   3'- -UCCGCUUG-------------UGGCGGUCGUaCAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 30899 0.77 0.144607
Target:  5'- cGGCGAagaagACACCGaCCGGCAUGcCGCa- -3'
miRNA:   3'- uCCGCU-----UGUGGC-GGUCGUACaGCGag -5'
19250 5' -57.3 NC_004684.1 + 30333 0.77 0.152667
Target:  5'- cAGGCGAucuGCugCGCCAGCAgGUUGUUg -3'
miRNA:   3'- -UCCGCU---UGugGCGGUCGUaCAGCGAg -5'
19250 5' -57.3 NC_004684.1 + 28193 0.76 0.170018
Target:  5'- gAGGCGcacguggacAGCACCGCCAGCcUG-CGCUa -3'
miRNA:   3'- -UCCGC---------UUGUGGCGGUCGuACaGCGAg -5'
19250 5' -57.3 NC_004684.1 + 43453 0.75 0.191121
Target:  5'- cAGGCGggUGCCGCgcagcuccgggaaugCAGCGagcUGUUGCUCg -3'
miRNA:   3'- -UCCGCuuGUGGCG---------------GUCGU---ACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 59538 0.75 0.19417
Target:  5'- cAGGUccuGCACCGCCAGCGcgcgccguUGUCGCa- -3'
miRNA:   3'- -UCCGcu-UGUGGCGGUCGU--------ACAGCGag -5'
19250 5' -57.3 NC_004684.1 + 32822 0.74 0.227067
Target:  5'- -aGCGAgcaGCACCGCCAGCg---CGCUCu -3'
miRNA:   3'- ucCGCU---UGUGGCGGUCGuacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 38248 0.74 0.232988
Target:  5'- cGGCGAACugCGUCGGCAccaccaGCUCg -3'
miRNA:   3'- uCCGCUUGugGCGGUCGUacag--CGAG- -5'
19250 5' -57.3 NC_004684.1 + 61413 0.74 0.239039
Target:  5'- cAGGCcgGGACuuCGCuCGGCcgGUCGCUCa -3'
miRNA:   3'- -UCCG--CUUGugGCG-GUCGuaCAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 49863 0.73 0.24522
Target:  5'- uAGGCGAccACGUCGuCCGGCGUGgcaccgCGCUCg -3'
miRNA:   3'- -UCCGCU--UGUGGC-GGUCGUACa-----GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 55991 0.73 0.251534
Target:  5'- cGGCGAACACaucgCGCgCGGCAaGUCGCg- -3'
miRNA:   3'- uCCGCUUGUG----GCG-GUCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 61471 0.73 0.257981
Target:  5'- uGGCcAGCGCgGCCAGCcgGUCGUg- -3'
miRNA:   3'- uCCGcUUGUGgCGGUCGuaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 58142 0.73 0.257981
Target:  5'- gGGGaUGAGCACCGCCAGCGUcGgcaGCa- -3'
miRNA:   3'- -UCC-GCUUGUGGCGGUCGUA-Cag-CGag -5'
19250 5' -57.3 NC_004684.1 + 7436 0.73 0.264562
Target:  5'- cGGCacGAGCGCCGCCAGCAcaacgCGCa- -3'
miRNA:   3'- uCCG--CUUGUGGCGGUCGUaca--GCGag -5'
19250 5' -57.3 NC_004684.1 + 23587 0.73 0.270601
Target:  5'- -cGCGAACACCGCC-GCcgGUgguaucacccgcgCGCUCa -3'
miRNA:   3'- ucCGCUUGUGGCGGuCGuaCA-------------GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 51523 0.72 0.292251
Target:  5'- uGGCgGGACACCuucuccagguaGCCgAGCAccuUGUCGCUCu -3'
miRNA:   3'- uCCG-CUUGUGG-----------CGG-UCGU---ACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 11161 0.72 0.299518
Target:  5'- cGGUGGACcugGCCGCCAGCGaGUgGgUCa -3'
miRNA:   3'- uCCGCUUG---UGGCGGUCGUaCAgCgAG- -5'
19250 5' -57.3 NC_004684.1 + 13778 0.72 0.306177
Target:  5'- cAGGCGAccaaccuGCGCCuCCAGCgcgGUGUCGCcCg -3'
miRNA:   3'- -UCCGCU-------UGUGGcGGUCG---UACAGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 59843 0.72 0.306924
Target:  5'- uAGGCGAaccagaACGCCGCCacGGCGgccagGUCGgUCc -3'
miRNA:   3'- -UCCGCU------UGUGGCGG--UCGUa----CAGCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.