miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 1271 0.72 0.306924
Target:  5'- cGGCGAcCACuuCGCCAGCAcgcGUCGCg- -3'
miRNA:   3'- uCCGCUuGUG--GCGGUCGUa--CAGCGag -5'
19250 5' -57.3 NC_004684.1 + 2272 0.69 0.463449
Target:  5'- cGGCGGGCauuGCCGCCAGCcUGggccacgaCGCg- -3'
miRNA:   3'- uCCGCUUG---UGGCGGUCGuACa-------GCGag -5'
19250 5' -57.3 NC_004684.1 + 2462 0.68 0.524218
Target:  5'- cAGGCGcuCACCGCCGcCAccuggGUCGC-Cg -3'
miRNA:   3'- -UCCGCuuGUGGCGGUcGUa----CAGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 3956 0.68 0.513861
Target:  5'- aAGGCGAccACGCUGUCG---UGUCGUUCa -3'
miRNA:   3'- -UCCGCU--UGUGGCGGUcguACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 4662 0.66 0.62015
Target:  5'- cGGUGuACACCGuCCuGCGUGccuugcaGCUCa -3'
miRNA:   3'- uCCGCuUGUGGC-GGuCGUACag-----CGAG- -5'
19250 5' -57.3 NC_004684.1 + 4756 0.68 0.503588
Target:  5'- cAGGCcuACGCCGCCuucguGCGcGUCGC-Ca -3'
miRNA:   3'- -UCCGcuUGUGGCGGu----CGUaCAGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 6023 0.66 0.630972
Target:  5'- cGGUGGccuuuAgGCCGCCAGCGccUCGCg- -3'
miRNA:   3'- uCCGCU-----UgUGGCGGUCGUacAGCGag -5'
19250 5' -57.3 NC_004684.1 + 6367 0.66 0.641794
Target:  5'- cGGCGAugGCCugcgcguuGCgCAGCGUGUUGg-- -3'
miRNA:   3'- uCCGCUugUGG--------CG-GUCGUACAGCgag -5'
19250 5' -57.3 NC_004684.1 + 7436 0.73 0.264562
Target:  5'- cGGCacGAGCGCCGCCAGCAcaacgCGCa- -3'
miRNA:   3'- uCCG--CUUGUGGCGGUCGUaca--GCGag -5'
19250 5' -57.3 NC_004684.1 + 7884 0.69 0.434473
Target:  5'- cGGUGAGCACaCGUCAGCGUGcC-CUg -3'
miRNA:   3'- uCCGCUUGUG-GCGGUCGUACaGcGAg -5'
19250 5' -57.3 NC_004684.1 + 8044 0.66 0.609339
Target:  5'- uGGCGGuccucCAgCGCCAGCAggGUgCgGCUCa -3'
miRNA:   3'- uCCGCUu----GUgGCGGUCGUa-CA-G-CGAG- -5'
19250 5' -57.3 NC_004684.1 + 9451 0.66 0.609339
Target:  5'- -aGCGAGCACCGCaGGCG-GUCGg-- -3'
miRNA:   3'- ucCGCUUGUGGCGgUCGUaCAGCgag -5'
19250 5' -57.3 NC_004684.1 + 9555 0.66 0.609339
Target:  5'- cGGGCGggUACCggcgGCCAGCAc--CGC-Cg -3'
miRNA:   3'- -UCCGCuuGUGG----CGGUCGUacaGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 10258 0.83 0.058937
Target:  5'- gAGGCGAACcagccgcgccaguGCUGCCAGCG-GUCGCUCc -3'
miRNA:   3'- -UCCGCUUG-------------UGGCGGUCGUaCAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 11156 0.67 0.555737
Target:  5'- cGGCGuuGCgcaggcugACCGCCuGCAUGcgcCGCUCc -3'
miRNA:   3'- uCCGCu-UG--------UGGCGGuCGUACa--GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 11161 0.72 0.299518
Target:  5'- cGGUGGACcugGCCGCCAGCGaGUgGgUCa -3'
miRNA:   3'- uCCGCUUG---UGGCGGUCGUaCAgCgAG- -5'
19250 5' -57.3 NC_004684.1 + 11303 0.68 0.534654
Target:  5'- -cGC---CACCGCCAGCAUGcCGCa- -3'
miRNA:   3'- ucCGcuuGUGGCGGUCGUACaGCGag -5'
19250 5' -57.3 NC_004684.1 + 11986 0.66 0.630972
Target:  5'- cGGCG-GCACCGaCGGCAUGacccCGCa- -3'
miRNA:   3'- uCCGCuUGUGGCgGUCGUACa---GCGag -5'
19250 5' -57.3 NC_004684.1 + 12204 0.67 0.587783
Target:  5'- -aGCGc-CGCCGCCAGCGgugCGUUCu -3'
miRNA:   3'- ucCGCuuGUGGCGGUCGUacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 13256 0.69 0.463449
Target:  5'- cAGGCcGugACCGCCAGCg---CGCUg -3'
miRNA:   3'- -UCCGcUugUGGCGGUCGuacaGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.