miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 26503 0.69 0.434473
Target:  5'- uGGCGAGCacgugcugaccACCGCUGaCGUGUCGCg- -3'
miRNA:   3'- uCCGCUUG-----------UGGCGGUcGUACAGCGag -5'
19250 5' -57.3 NC_004684.1 + 25079 0.71 0.337942
Target:  5'- cGGCaacGugGCCGaCCucccggcaGGCAUGUCGCUCa -3'
miRNA:   3'- uCCGc--UugUGGC-GG--------UCGUACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 33092 0.71 0.354285
Target:  5'- cGGCGuGGCGCUGCCGacGCAgg-CGCUCg -3'
miRNA:   3'- uCCGC-UUGUGGCGGU--CGUacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 28272 0.71 0.371178
Target:  5'- uGGuGCGcGAgGCCGCUGGCGUGgUGCUCa -3'
miRNA:   3'- -UC-CGC-UUgUGGCGGUCGUACaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 44173 0.7 0.379828
Target:  5'- cGGCGAugaacccgGCGCgCGCCAGCAccUCGCg- -3'
miRNA:   3'- uCCGCU--------UGUG-GCGGUCGUacAGCGag -5'
19250 5' -57.3 NC_004684.1 + 30166 0.7 0.388612
Target:  5'- uGGGCGAucaACGCCGUCGGCGgcgaGCUg -3'
miRNA:   3'- -UCCGCU---UGUGGCGGUCGUacagCGAg -5'
19250 5' -57.3 NC_004684.1 + 63516 0.7 0.406575
Target:  5'- aGGGCGGccuggcgucGCAgcUCGCgGGCGUGgCGCUCg -3'
miRNA:   3'- -UCCGCU---------UGU--GGCGgUCGUACaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 40179 0.69 0.424114
Target:  5'- cGGCGAagcucauGCGCUGCUcGC-UGUCGCUg -3'
miRNA:   3'- uCCGCU-------UGUGGCGGuCGuACAGCGAg -5'
19250 5' -57.3 NC_004684.1 + 7884 0.69 0.434473
Target:  5'- cGGUGAGCACaCGUCAGCGUGcC-CUg -3'
miRNA:   3'- uCCGCUUGUG-GCGGUCGUACaGcGAg -5'
19250 5' -57.3 NC_004684.1 + 57251 0.71 0.329979
Target:  5'- uGGGCGGgcgGCACCGUCGGCccGcacaGCUCg -3'
miRNA:   3'- -UCCGCU---UGUGGCGGUCGuaCag--CGAG- -5'
19250 5' -57.3 NC_004684.1 + 45291 0.72 0.322155
Target:  5'- cGGCcacagGAACACCaGCCAGCc-GUCGCUg -3'
miRNA:   3'- uCCG-----CUUGUGG-CGGUCGuaCAGCGAg -5'
19250 5' -57.3 NC_004684.1 + 59843 0.72 0.306924
Target:  5'- uAGGCGAaccagaACGCCGCCacGGCGgccagGUCGgUCc -3'
miRNA:   3'- -UCCGCU------UGUGGCGG--UCGUa----CAGCgAG- -5'
19250 5' -57.3 NC_004684.1 + 30899 0.77 0.144607
Target:  5'- cGGCGAagaagACACCGaCCGGCAUGcCGCa- -3'
miRNA:   3'- uCCGCU-----UGUGGC-GGUCGUACaGCGag -5'
19250 5' -57.3 NC_004684.1 + 28193 0.76 0.170018
Target:  5'- gAGGCGcacguggacAGCACCGCCAGCcUG-CGCUa -3'
miRNA:   3'- -UCCGC---------UUGUGGCGGUCGuACaGCGAg -5'
19250 5' -57.3 NC_004684.1 + 59538 0.75 0.19417
Target:  5'- cAGGUccuGCACCGCCAGCGcgcgccguUGUCGCa- -3'
miRNA:   3'- -UCCGcu-UGUGGCGGUCGU--------ACAGCGag -5'
19250 5' -57.3 NC_004684.1 + 55991 0.73 0.251534
Target:  5'- cGGCGAACACaucgCGCgCGGCAaGUCGCg- -3'
miRNA:   3'- uCCGCUUGUG----GCG-GUCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 23587 0.73 0.270601
Target:  5'- -cGCGAACACCGCC-GCcgGUgguaucacccgcgCGCUCa -3'
miRNA:   3'- ucCGCUUGUGGCGGuCGuaCA-------------GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 51523 0.72 0.292251
Target:  5'- uGGCgGGACACCuucuccagguaGCCgAGCAccuUGUCGCUCu -3'
miRNA:   3'- uCCG-CUUGUGG-----------CGG-UCGU---ACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 11161 0.72 0.299518
Target:  5'- cGGUGGACcugGCCGCCAGCGaGUgGgUCa -3'
miRNA:   3'- uCCGCUUG---UGGCGGUCGUaCAgCgAG- -5'
19250 5' -57.3 NC_004684.1 + 13778 0.72 0.306177
Target:  5'- cAGGCGAccaaccuGCGCCuCCAGCgcgGUGUCGCcCg -3'
miRNA:   3'- -UCCGCU-------UGUGGcGGUCG---UACAGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.