miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 5' -57.5 NC_004684.1 + 42648 0.66 0.618585
Target:  5'- gUGCCGC-CaGCGaugagCGCGGUGgaGGGCa -3'
miRNA:   3'- aACGGCGuG-CGCg----GCGUCAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 7850 0.66 0.607683
Target:  5'- --aCgGCGCGCGCUGgCGGUGcaGGACc -3'
miRNA:   3'- aacGgCGUGCGCGGC-GUCAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 24514 0.66 0.606594
Target:  5'- -gGCCGCGCGUucggcgguGCCaucuacgGCGGUGUgccGGGCc -3'
miRNA:   3'- aaCGGCGUGCG--------CGG-------CGUCAUAa--CCUG- -5'
19251 5' -57.5 NC_004684.1 + 60345 0.66 0.604416
Target:  5'- --aCCGCGCGUucgGCCaGCGGUgccaggucggucagGUUGGGCa -3'
miRNA:   3'- aacGGCGUGCG---CGG-CGUCA--------------UAACCUG- -5'
19251 5' -57.5 NC_004684.1 + 3813 0.66 0.596802
Target:  5'- -cGCCGCGC-CG-CGCAGgccgaUGGACc -3'
miRNA:   3'- aaCGGCGUGcGCgGCGUCaua--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 66197 0.66 0.585951
Target:  5'- -cGCCGCGCuuGCCGUAGUAguccagcgccUGcGGCu -3'
miRNA:   3'- aaCGGCGUGcgCGGCGUCAUa---------AC-CUG- -5'
19251 5' -57.5 NC_004684.1 + 7445 0.66 0.584868
Target:  5'- -cGCCGCcagcacaACGCGCaCGUGGggccGGACa -3'
miRNA:   3'- aaCGGCG-------UGCGCG-GCGUCauaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 49896 0.66 0.582702
Target:  5'- -cGUCGCGCcggacauggugaucGCGCC-CAG-GUUGGACg -3'
miRNA:   3'- aaCGGCGUG--------------CGCGGcGUCaUAACCUG- -5'
19251 5' -57.5 NC_004684.1 + 44954 0.66 0.575137
Target:  5'- -cGCCGC-CGCGCCGaCGGcgaUGG-Cg -3'
miRNA:   3'- aaCGGCGuGCGCGGC-GUCauaACCuG- -5'
19251 5' -57.5 NC_004684.1 + 18135 0.66 0.575137
Target:  5'- -cGCCaacauGgACGCGCCGCuGUGggGcGACg -3'
miRNA:   3'- aaCGG-----CgUGCGCGGCGuCAUaaC-CUG- -5'
19251 5' -57.5 NC_004684.1 + 49039 0.66 0.575137
Target:  5'- -aGCgGCAcCGCGCCGcCGGUcggcuccggGGGCg -3'
miRNA:   3'- aaCGgCGU-GCGCGGC-GUCAuaa------CCUG- -5'
19251 5' -57.5 NC_004684.1 + 64178 0.66 0.575137
Target:  5'- gUGCuCGCGCGCGUCccaGguGUAggGGGu -3'
miRNA:   3'- aACG-GCGUGCGCGG---CguCAUaaCCUg -5'
19251 5' -57.5 NC_004684.1 + 54627 0.66 0.575137
Target:  5'- -gGCCGCAgGCGCagccgCGCGGgccaagaGGGCg -3'
miRNA:   3'- aaCGGCGUgCGCG-----GCGUCauaa---CCUG- -5'
19251 5' -57.5 NC_004684.1 + 25449 0.66 0.575137
Target:  5'- -gGCCGUugGUGCCGCcGUugaccgccUUGGuCa -3'
miRNA:   3'- aaCGGCGugCGCGGCGuCAu-------AACCuG- -5'
19251 5' -57.5 NC_004684.1 + 63585 0.66 0.57298
Target:  5'- -gGCCuGCGCgGCGCgGCGGUGguuaccgccucGGACg -3'
miRNA:   3'- aaCGG-CGUG-CGCGgCGUCAUaa---------CCUG- -5'
19251 5' -57.5 NC_004684.1 + 45043 0.66 0.571902
Target:  5'- -cGCCGC-CGcCGCCGCcaccgccuguaccgGGUGgcGGGCc -3'
miRNA:   3'- aaCGGCGuGC-GCGGCG--------------UCAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 58527 0.66 0.56437
Target:  5'- gUGCCGUugGCG--GCGGcGUUGGAg -3'
miRNA:   3'- aACGGCGugCGCggCGUCaUAACCUg -5'
19251 5' -57.5 NC_004684.1 + 22196 0.66 0.56437
Target:  5'- cUGCCGCuggaGCGCgGCGGggugGUggccgacuucaUGGACc -3'
miRNA:   3'- aACGGCGug--CGCGgCGUCa---UA-----------ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 58630 0.66 0.56437
Target:  5'- -gGCgGCugGUGCCGCGc---UGGGCc -3'
miRNA:   3'- aaCGgCGugCGCGGCGUcauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 7517 0.67 0.557935
Target:  5'- -cGCCGCGCGCGUgacccgacugaucaaCuucgacGCGGUGcUGGACc -3'
miRNA:   3'- aaCGGCGUGCGCG---------------G------CGUCAUaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.