miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 67193 0.67 0.597678
Target:  5'- cUCAGCGuUGCcaGGGCCaccuuGGUGGUGGUc- -3'
miRNA:   3'- -AGUUGUuAUG--CCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 66526 0.66 0.662811
Target:  5'- uUCAGCGcggcccgGCGGGCaCGGcGGUaGGCGUu -3'
miRNA:   3'- -AGUUGUua-----UGCCCG-GCCaCCG-CCGUA- -5'
19254 3' -56.8 NC_004684.1 + 66138 0.66 0.641107
Target:  5'- cCAGCGcAUcUGGGCCGG-GGCcgGGCGa -3'
miRNA:   3'- aGUUGU-UAuGCCCGGCCaCCG--CCGUa -5'
19254 3' -56.8 NC_004684.1 + 65100 0.68 0.523069
Target:  5'- gUCAGCAccGCGucguGGCCcaGGcUGGCGGCAa -3'
miRNA:   3'- -AGUUGUuaUGC----CCGG--CC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 64482 0.67 0.565374
Target:  5'- -------aGCaGGCCGGUGGUGGCc- -3'
miRNA:   3'- aguuguuaUGcCCGGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 62977 0.68 0.554701
Target:  5'- cUCggUggUGCGcacguGGCCGGUGGcCGGgAa -3'
miRNA:   3'- -AGuuGuuAUGC-----CCGGCCACC-GCCgUa -5'
19254 3' -56.8 NC_004684.1 + 61057 1.05 0.001408
Target:  5'- uUCAACAAUACGGGCCGGUGGCGGCAUu -3'
miRNA:   3'- -AGUUGUUAUGCCCGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 59820 0.73 0.262978
Target:  5'- cUCAGCAuggcGCGGuGCCGGUGuaGGCGa -3'
miRNA:   3'- -AGUUGUua--UGCC-CGGCCACcgCCGUa -5'
19254 3' -56.8 NC_004684.1 + 59449 0.66 0.673626
Target:  5'- cCAcCGGUGUGcGCCGGUcGGCGGCGa -3'
miRNA:   3'- aGUuGUUAUGCcCGGCCA-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 57881 0.66 0.662811
Target:  5'- cCAGacCGGUGCuGGCUGGUGGCcgGGCu- -3'
miRNA:   3'- aGUU--GUUAUGcCCGGCCACCG--CCGua -5'
19254 3' -56.8 NC_004684.1 + 57186 0.68 0.512677
Target:  5'- -gGGCGcagGCGGGCCuGGaaGGCGGCGg -3'
miRNA:   3'- agUUGUua-UGCCCGG-CCa-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 57130 0.69 0.452312
Target:  5'- gCAGCAcugGCGcGGCUGGUucgccuccauGGCGGCGg -3'
miRNA:   3'- aGUUGUua-UGC-CCGGCCA----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 55810 0.66 0.673626
Target:  5'- --cGCAccgGCGGGCUGGUGuggaacucGCGGUAg -3'
miRNA:   3'- aguUGUua-UGCCCGGCCAC--------CGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 54277 0.67 0.619371
Target:  5'- -aAGCugccGCGcuGGCCGGUggGGCGGCGUg -3'
miRNA:   3'- agUUGuua-UGC--CCGGCCA--CCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 52873 0.66 0.662811
Target:  5'- gCAcCGGUACauGCCGGUGGCaGCAc -3'
miRNA:   3'- aGUuGUUAUGccCGGCCACCGcCGUa -5'
19254 3' -56.8 NC_004684.1 + 51986 0.74 0.256401
Target:  5'- gUCAACAAUGCuGGCCGccccgaUGGCGGCc- -3'
miRNA:   3'- -AGUUGUUAUGcCCGGCc-----ACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 51510 0.66 0.641107
Target:  5'- gCGGCugcacaGGGCCGcUGGCGGCc- -3'
miRNA:   3'- aGUUGuuaug-CCCGGCcACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 49219 0.67 0.608515
Target:  5'- gUCGGuCGGUGcCGGGCCGGgcguCGGCAc -3'
miRNA:   3'- -AGUU-GUUAU-GCCCGGCCacc-GCCGUa -5'
19254 3' -56.8 NC_004684.1 + 49163 0.7 0.433061
Target:  5'- -gGGCAGUACGGcGCagucuCGGcGGCGGCGg -3'
miRNA:   3'- agUUGUUAUGCC-CG-----GCCaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 48951 0.66 0.651968
Target:  5'- aCGGCAcgucgGCGGGCgGgGUGGCcggGGCGg -3'
miRNA:   3'- aGUUGUua---UGCCCGgC-CACCG---CCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.