miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 51986 0.74 0.256401
Target:  5'- gUCAACAAUGCuGGCCGccccgaUGGCGGCc- -3'
miRNA:   3'- -AGUUGUUAUGcCCGGCc-----ACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 51510 0.66 0.641107
Target:  5'- gCGGCugcacaGGGCCGcUGGCGGCc- -3'
miRNA:   3'- aGUUGuuaug-CCCGGCcACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 66138 0.66 0.641107
Target:  5'- cCAGCGcAUcUGGGCCGG-GGCcgGGCGa -3'
miRNA:   3'- aGUUGU-UAuGCCCGGCCaCCG--CCGUa -5'
19254 3' -56.8 NC_004684.1 + 55810 0.66 0.673626
Target:  5'- --cGCAccgGCGGGCUGGUGuggaacucGCGGUAg -3'
miRNA:   3'- aguUGUua-UGCCCGGCCAC--------CGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 13087 0.7 0.395138
Target:  5'- gUCAGCcgccaagggggccGAUGCGcgcacccccGGCCgGGUGGCGGCGc -3'
miRNA:   3'- -AGUUG-------------UUAUGC---------CCGG-CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 23268 0.7 0.396038
Target:  5'- cUCAACGAcGCGGGCgaggagCGcGUGGuCGGCAc -3'
miRNA:   3'- -AGUUGUUaUGCCCG------GC-CACC-GCCGUa -5'
19254 3' -56.8 NC_004684.1 + 9548 0.69 0.462112
Target:  5'- -uGGCAAU-CGGGCgGGUaccGGCGGCc- -3'
miRNA:   3'- agUUGUUAuGCCCGgCCA---CCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 35650 0.69 0.482038
Target:  5'- cCGAC-GUACaGGGCCGucGGCGGCGg -3'
miRNA:   3'- aGUUGuUAUG-CCCGGCcaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 39306 0.68 0.544088
Target:  5'- ---cCGGUGCGGGUCGcGcGGCGGCc- -3'
miRNA:   3'- aguuGUUAUGCCCGGC-CaCCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 7530 0.67 0.58687
Target:  5'- cCGGCAccgACcuGGCCGccGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUua-UGc-CCGGC--CACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 65100 0.68 0.523069
Target:  5'- gUCAGCAccGCGucguGGCCcaGGcUGGCGGCAa -3'
miRNA:   3'- -AGUUGUuaUGC----CCGG--CC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 30627 0.72 0.312882
Target:  5'- gUCGGCAc--CGGGCgCGGcccUGGCGGCGUc -3'
miRNA:   3'- -AGUUGUuauGCCCG-GCC---ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 67193 0.67 0.597678
Target:  5'- cUCAGCGuUGCcaGGGCCaccuuGGUGGUGGUc- -3'
miRNA:   3'- -AGUUGUuAUG--CCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 40972 0.72 0.326823
Target:  5'- gCGGCGAaccccgcugccaGCGcGCCGGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUUa-----------UGCcCGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 18284 0.68 0.516824
Target:  5'- cCGACGccgACGGcgaccuguggcaccuGCCGGuUGGCGGCGa -3'
miRNA:   3'- aGUUGUua-UGCC---------------CGGCC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 54277 0.67 0.619371
Target:  5'- -aAGCugccGCGcuGGCCGGUggGGCGGCGUg -3'
miRNA:   3'- agUUGuua-UGC--CCGGCCA--CCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 23967 0.66 0.662811
Target:  5'- cUCGGCcucgcCGGGCCucgGGUucGGCGGCGg -3'
miRNA:   3'- -AGUUGuuau-GCCCGG---CCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 9212 0.72 0.3284
Target:  5'- cCAGCA----GGuGCUGGUGGCGGCAc -3'
miRNA:   3'- aGUUGUuaugCC-CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 39926 0.69 0.452312
Target:  5'- aCcuCAAUACGcuugucaccGCCGGUGGUGGCAc -3'
miRNA:   3'- aGuuGUUAUGCc--------CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 14932 0.67 0.565374
Target:  5'- gCGGCcAUGCcgucGGGCauccCGGUGGCGGCc- -3'
miRNA:   3'- aGUUGuUAUG----CCCG----GCCACCGCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.