miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 49505 0.66 0.514008
Target:  5'- -gGGUGGCCUCGaUGUuccacCACUUGcGCUc -3'
miRNA:   3'- aaCCACCGGAGCcGCAu----GUGGAC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 33992 0.66 0.514008
Target:  5'- gUUGGUGGUgUUGGUGaACgugACCgUGGUCg -3'
miRNA:   3'- -AACCACCGgAGCCGCaUG---UGG-ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 61154 0.66 0.514008
Target:  5'- -gGGUGuaCUCGGUcagcCACCcGGCCa -3'
miRNA:   3'- aaCCACcgGAGCCGcau-GUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 32911 0.66 0.514008
Target:  5'- -gGGUGuCCUCGGCGgUGCcggaccggguGCCUcgggcaggaugGGCCg -3'
miRNA:   3'- aaCCACcGGAGCCGC-AUG----------UGGA-----------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 5033 0.66 0.514008
Target:  5'- -cGGUGGCCaccacGCGUcugGCACCcGGCg -3'
miRNA:   3'- aaCCACCGGagc--CGCA---UGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 40031 0.66 0.514008
Target:  5'- aUGGUGGCCUUGGgCaucAUGCCgGuGCCc -3'
miRNA:   3'- aACCACCGGAGCC-Gca-UGUGGaC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 41440 0.66 0.514008
Target:  5'- ---uUGGCCagcUCGGCGUuggGCACCUuguuGCCg -3'
miRNA:   3'- aaccACCGG---AGCCGCA---UGUGGAc---CGG- -5'
19255 5' -60.1 NC_004684.1 + 14175 0.66 0.514008
Target:  5'- gUGGUGGUgCUgGGCacccuggACGcauuCCUGGCCa -3'
miRNA:   3'- aACCACCG-GAgCCGca-----UGU----GGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 60076 0.66 0.503926
Target:  5'- -cGGcGGCC-CGuGCGggccuuCACCgGGCCa -3'
miRNA:   3'- aaCCaCCGGaGC-CGCau----GUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 9543 0.66 0.503926
Target:  5'- cUGGUGcGCCggUUGGagccgGUGCGCCgcgaacacgUGGCCg -3'
miRNA:   3'- aACCAC-CGG--AGCCg----CAUGUGG---------ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 47645 0.66 0.503926
Target:  5'- gUGGacGGCCagugCGGCGUugGCC--GCCu -3'
miRNA:   3'- aACCa-CCGGa---GCCGCAugUGGacCGG- -5'
19255 5' -60.1 NC_004684.1 + 43717 0.66 0.503926
Target:  5'- cUGGUccgggccgaccaGGCCgUCGGUGUAC-CC-GGUCa -3'
miRNA:   3'- aACCA------------CCGG-AGCCGCAUGuGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 62472 0.66 0.503926
Target:  5'- -aGGUGGCCgUUGGCGacCGCCUcGaGCa -3'
miRNA:   3'- aaCCACCGG-AGCCGCauGUGGA-C-CGg -5'
19255 5' -60.1 NC_004684.1 + 22690 0.66 0.503926
Target:  5'- -aGGacaUGGCCcCGGCGgcgcaGgACgUGGCCa -3'
miRNA:   3'- aaCC---ACCGGaGCCGCa----UgUGgACCGG- -5'
19255 5' -60.1 NC_004684.1 + 53686 0.66 0.503926
Target:  5'- cUGGgucgGGaugauCUUCGGCGUGC-CCgaaccGGCCa -3'
miRNA:   3'- aACCa---CC-----GGAGCCGCAUGuGGa----CCGG- -5'
19255 5' -60.1 NC_004684.1 + 66911 0.66 0.503926
Target:  5'- -cGGcgcGGCCUUGGCGgccACaACCUcGGCg -3'
miRNA:   3'- aaCCa--CCGGAGCCGCa--UG-UGGA-CCGg -5'
19255 5' -60.1 NC_004684.1 + 19668 0.66 0.502923
Target:  5'- -aGGUaacgcgcucuaccGGCg-CGGCGgcaAgGCCUGGCCg -3'
miRNA:   3'- aaCCA-------------CCGgaGCCGCa--UgUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 11599 0.66 0.493931
Target:  5'- -cGGUGcGCCU-GGaCGacgGCACCgagcUGGCCg -3'
miRNA:   3'- aaCCAC-CGGAgCC-GCa--UGUGG----ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 19717 0.66 0.493931
Target:  5'- cUGGgacGGCCacUCGGUGagcgcgGCACCUGGa- -3'
miRNA:   3'- aACCa--CCGG--AGCCGCa-----UGUGGACCgg -5'
19255 5' -60.1 NC_004684.1 + 23045 0.66 0.493931
Target:  5'- -----cGCCUUGGUG-ACgGCCUGGCCa -3'
miRNA:   3'- aaccacCGGAGCCGCaUG-UGGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.