miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 39969 0.66 0.768314
Target:  5'- aGCGCCAUccccUGCGcuccGGGCACCuGGuCGGu -3'
miRNA:   3'- aCGUGGUGuu--AUGC----CCUGUGG-CC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 5882 0.66 0.727824
Target:  5'- aGCACCAgccugacCGGGugG-CGGCGGc -3'
miRNA:   3'- aCGUGGUguuau--GCCCugUgGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 32079 0.66 0.737085
Target:  5'- cGCACCGCGuc-UGGGugAgcguuggCCaGGCGGu -3'
miRNA:   3'- aCGUGGUGUuauGCCCugU-------GG-CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 61794 0.66 0.752336
Target:  5'- cGCGCCagcucggccccgucgGCAG-GCGGGuCGCCuugcaGGCGGu -3'
miRNA:   3'- aCGUGG---------------UGUUaUGCCCuGUGG-----CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 11845 0.66 0.742196
Target:  5'- gGCGCgACuucggcaACGGGuacgaacucguggcgGCGCUGGCGGu -3'
miRNA:   3'- aCGUGgUGuua----UGCCC---------------UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 55816 0.66 0.748293
Target:  5'- aGCGCgUGCGAgcACGGGGUGCCGGUGa -3'
miRNA:   3'- aCGUG-GUGUUa-UGCCCUGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 4100 0.66 0.748293
Target:  5'- cGCGCgu-GGUGCaGGGAUAcgcCCGGCGGc -3'
miRNA:   3'- aCGUGgugUUAUG-CCCUGU---GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 36484 0.66 0.767325
Target:  5'- gGCACCggguucgacaucgGCAAggcCGGGACGCUGaGCcuGGg -3'
miRNA:   3'- aCGUGG-------------UGUUau-GCCCUGUGGC-CG--CC- -5'
19256 3' -55.9 NC_004684.1 + 3639 0.66 0.768314
Target:  5'- cGCGCCACc---UGGGucAUGCCGGuCGGc -3'
miRNA:   3'- aCGUGGUGuuauGCCC--UGUGGCC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 40098 0.66 0.748293
Target:  5'- aGCGgC-CGAUcucguggccguaGCGGG-CGCUGGCGGc -3'
miRNA:   3'- aCGUgGuGUUA------------UGCCCuGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 22057 0.66 0.778129
Target:  5'- aGCGCCaggcACAGUcuggcuacCGGGACACCGcacGCGc -3'
miRNA:   3'- aCGUGG----UGUUAu-------GCCCUGUGGC---CGCc -5'
19256 3' -55.9 NC_004684.1 + 951 0.66 0.748293
Target:  5'- cGCuuCGCGGgccUGCGGGuCAUUGGCGa -3'
miRNA:   3'- aCGugGUGUU---AUGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 57175 0.66 0.748293
Target:  5'- cGCGCaCGCu---CGGG-CGCaGGCGGg -3'
miRNA:   3'- aCGUG-GUGuuauGCCCuGUGgCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 30138 0.66 0.748293
Target:  5'- gGCACCGCGcaguGUGCGcgucggccaguGGGCGaucaacgccgUCGGCGGc -3'
miRNA:   3'- aCGUGGUGU----UAUGC-----------CCUGU----------GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 36773 0.66 0.727824
Target:  5'- cGCGCC-CGGUGCc-GACGCUGGuCGGc -3'
miRNA:   3'- aCGUGGuGUUAUGccCUGUGGCC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 57242 0.66 0.738109
Target:  5'- cGCcCCACcuggGCGGGcgGCACCGuCGGc -3'
miRNA:   3'- aCGuGGUGuua-UGCCC--UGUGGCcGCC- -5'
19256 3' -55.9 NC_004684.1 + 65850 0.66 0.727824
Target:  5'- gUGCACCGCAugcgagcGCGGGucgcgucguCGCCGuugagcGCGGc -3'
miRNA:   3'- -ACGUGGUGUua-----UGCCCu--------GUGGC------CGCC- -5'
19256 3' -55.9 NC_004684.1 + 66745 0.66 0.748293
Target:  5'- cGCACCACccGGUACaGcACcCCGGCGa -3'
miRNA:   3'- aCGUGGUG--UUAUGcCcUGuGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 53738 0.66 0.778129
Target:  5'- gUGCGCCACGAgacaccacGCaGG-UGCgCGGCGGc -3'
miRNA:   3'- -ACGUGGUGUUa-------UGcCCuGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 48862 0.66 0.755355
Target:  5'- cGCGCCagugcgcgaacgggGCGAUGacCGGGACGCCGaacUGGc -3'
miRNA:   3'- aCGUGG--------------UGUUAU--GCCCUGUGGCc--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.