miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 33876 0.71 0.456376
Target:  5'- gGCcuACCagGCGGUGCGGGcggUGCCGGUGGg -3'
miRNA:   3'- aCG--UGG--UGUUAUGCCCu--GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 31639 0.72 0.381108
Target:  5'- cGCGCUACAccauccccgcCGGGACGCUGGCa- -3'
miRNA:   3'- aCGUGGUGUuau-------GCCCUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 30298 0.72 0.399587
Target:  5'- gGCGCUaucggcuacgacgACGAgguCGGGGCACCGGCc- -3'
miRNA:   3'- aCGUGG-------------UGUUau-GCCCUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 67072 0.72 0.41863
Target:  5'- cGUACC-CGGUGCGGGcguugGCcUCGGCGGc -3'
miRNA:   3'- aCGUGGuGUUAUGCCC-----UGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 55190 0.72 0.42789
Target:  5'- cGCACCGCug-GCGGcGGCGCUGGauGc -3'
miRNA:   3'- aCGUGGUGuuaUGCC-CUGUGGCCgcC- -5'
19256 3' -55.9 NC_004684.1 + 64653 0.72 0.42789
Target:  5'- cGCACCGCGAUGuCGGcGCGCa-GCGGc -3'
miRNA:   3'- aCGUGGUGUUAU-GCCcUGUGgcCGCC- -5'
19256 3' -55.9 NC_004684.1 + 58775 0.71 0.437269
Target:  5'- cUGCACugcgCACAGUGUGGGGCcagguugucCCGGCGGu -3'
miRNA:   3'- -ACGUG----GUGUUAUGCCCUGu--------GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 61573 0.71 0.437269
Target:  5'- aGCACuCGCGcaGCuGGGACGCCucGGUGGu -3'
miRNA:   3'- aCGUG-GUGUuaUG-CCCUGUGG--CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 28739 0.71 0.437269
Target:  5'- gGCACCgacguGCGGUGCGaGGACaACCGGUu- -3'
miRNA:   3'- aCGUGG-----UGUUAUGC-CCUG-UGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 18416 0.73 0.357372
Target:  5'- gGCgGCC-CG--GCGGGcGCACCGGCGGc -3'
miRNA:   3'- aCG-UGGuGUuaUGCCC-UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 15214 0.73 0.357372
Target:  5'- -uCACCACAccGCuGGGACACCaGUGGg -3'
miRNA:   3'- acGUGGUGUuaUG-CCCUGUGGcCGCC- -5'
19256 3' -55.9 NC_004684.1 + 38966 0.75 0.280602
Target:  5'- aGCACCGCAccgagguguucgcGcGCGGGuccaACACCGGCGu -3'
miRNA:   3'- aCGUGGUGU-------------UaUGCCC----UGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 63093 0.83 0.080421
Target:  5'- aGCACUACAuUACGGcGAC-CCGGCGGc -3'
miRNA:   3'- aCGUGGUGUuAUGCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 65809 0.79 0.147247
Target:  5'- gUGCACCggGCAGgugaccCGGaGGCACCGGCGGc -3'
miRNA:   3'- -ACGUGG--UGUUau----GCC-CUGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 26583 0.79 0.15958
Target:  5'- cGCGCgGCGGUgugcGCGGGuucgcCACCGGCGGc -3'
miRNA:   3'- aCGUGgUGUUA----UGCCCu----GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 15773 0.78 0.168313
Target:  5'- gGCACCuauCGcgGCGGcGACACCGGCa- -3'
miRNA:   3'- aCGUGGu--GUuaUGCC-CUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 59120 0.78 0.182214
Target:  5'- aGCGCCGCAGgucGCGGcGCACgUGGCGGg -3'
miRNA:   3'- aCGUGGUGUUa--UGCCcUGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 12619 0.77 0.192038
Target:  5'- cGCACCu---UGCGGG-CACCGGCGa -3'
miRNA:   3'- aCGUGGuguuAUGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 59997 0.76 0.224332
Target:  5'- cGCGCCGCAGUAUuGGACGgCgcaGGCGGg -3'
miRNA:   3'- aCGUGGUGUUAUGcCCUGUgG---CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 51902 0.75 0.273758
Target:  5'- gGCACCgaacucgGCGA-ACGGGugGCUGGUGGu -3'
miRNA:   3'- aCGUGG-------UGUUaUGCCCugUGGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.