miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 303 0.68 0.653871
Target:  5'- cUGUGCCaACAu--CGGGACcaagACCgGGCGGc -3'
miRNA:   3'- -ACGUGG-UGUuauGCCCUG----UGG-CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 951 0.66 0.748293
Target:  5'- cGCuuCGCGGgccUGCGGGuCAUUGGCGa -3'
miRNA:   3'- aCGugGUGUU---AUGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 999 0.67 0.706991
Target:  5'- aGCACCAaGGUGCGGaGAuuucCACCGcGCa- -3'
miRNA:   3'- aCGUGGUgUUAUGCC-CU----GUGGC-CGcc -5'
19256 3' -55.9 NC_004684.1 + 1481 0.7 0.505996
Target:  5'- cGUGCC-CGGUGCGGcGGCcCUGGUGGc -3'
miRNA:   3'- aCGUGGuGUUAUGCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 1628 0.69 0.568338
Target:  5'- cUGCACCggcGCAAc-CGGG-UACCGGCGc -3'
miRNA:   3'- -ACGUGG---UGUUauGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 2008 0.66 0.742196
Target:  5'- aGCGCCugGGUGgGGGuccgcgaugaccgucGCcCUGGUGGc -3'
miRNA:   3'- aCGUGGugUUAUgCCC---------------UGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 2743 0.66 0.748293
Target:  5'- cGCGCCgacaucGCGGUGCGccacGACGCCGaCGGc -3'
miRNA:   3'- aCGUGG------UGUUAUGCc---CUGUGGCcGCC- -5'
19256 3' -55.9 NC_004684.1 + 2847 0.7 0.52649
Target:  5'- aGCACCugGAccACGGGuuccuggucGCGCCGGaCGa -3'
miRNA:   3'- aCGUGGugUUa-UGCCC---------UGUGGCC-GCc -5'
19256 3' -55.9 NC_004684.1 + 2965 0.7 0.505996
Target:  5'- cGCGCUGCuguUGCGGGugGCCaaCGGg -3'
miRNA:   3'- aCGUGGUGuu-AUGCCCugUGGccGCC- -5'
19256 3' -55.9 NC_004684.1 + 3509 0.7 0.52649
Target:  5'- gGaCGCCGCAAUcgccgACGGGugGgccgacCUGGCGGu -3'
miRNA:   3'- aC-GUGGUGUUA-----UGCCCugU------GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 3591 0.71 0.475923
Target:  5'- aGCACCACGGU-CGcGGACACgaaGGCc- -3'
miRNA:   3'- aCGUGGUGUUAuGC-CCUGUGg--CCGcc -5'
19256 3' -55.9 NC_004684.1 + 3639 0.66 0.768314
Target:  5'- cGCGCCACc---UGGGucAUGCCGGuCGGc -3'
miRNA:   3'- aCGUGGUGuuauGCCC--UGUGGCC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 4100 0.66 0.748293
Target:  5'- cGCGCgu-GGUGCaGGGAUAcgcCCGGCGGc -3'
miRNA:   3'- aCGUGgugUUAUG-CCCUGU---GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 4776 0.68 0.63242
Target:  5'- aGCGCCACGgcuccgggGUGCGcGACgccaugACCGGCGc -3'
miRNA:   3'- aCGUGGUGU--------UAUGCcCUG------UGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 5403 0.68 0.6528
Target:  5'- gUGCGCgGCgGGUGCGGGuggcucaugguguACACCGaCGGu -3'
miRNA:   3'- -ACGUGgUG-UUAUGCCC-------------UGUGGCcGCC- -5'
19256 3' -55.9 NC_004684.1 + 5882 0.66 0.727824
Target:  5'- aGCACCAgccugacCGGGugG-CGGCGGc -3'
miRNA:   3'- aCGUGGUguuau--GCCCugUgGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 5903 0.66 0.731949
Target:  5'- aGCGCCGCcgccUGCGcggcgacaucgacuaGGuggcacgcgaGCACCGGCGGc -3'
miRNA:   3'- aCGUGGUGuu--AUGC---------------CC----------UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 6069 0.7 0.536854
Target:  5'- -aCGCCGCcgaggGCGGcGGC-CCGGCGGc -3'
miRNA:   3'- acGUGGUGuua--UGCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 7344 0.68 0.621689
Target:  5'- cGCGCCACgAGUGCGaGGC-CUGGCa- -3'
miRNA:   3'- aCGUGGUG-UUAUGCcCUGuGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 7396 0.67 0.68588
Target:  5'- aUGCGCcCGCugcUGCGGuuccGGCGCUGGCGc -3'
miRNA:   3'- -ACGUG-GUGuu-AUGCC----CUGUGGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.