miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 61423 1.1 0.001085
Target:  5'- aUGCACCACAAUACGGGACACCGGCGGc -3'
miRNA:   3'- -ACGUGGUGUUAUGCCCUGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 39298 0.85 0.060705
Target:  5'- cGCACCACccGGUGCGGGuCGCgCGGCGGc -3'
miRNA:   3'- aCGUGGUG--UUAUGCCCuGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 63093 0.83 0.080421
Target:  5'- aGCACUACAuUACGGcGAC-CCGGCGGc -3'
miRNA:   3'- aCGUGGUGUuAUGCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 47540 0.8 0.125155
Target:  5'- cUGCACCACGGUGCGcGGCaACCGGCa- -3'
miRNA:   3'- -ACGUGGUGUUAUGCcCUG-UGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 65809 0.79 0.147247
Target:  5'- gUGCACCggGCAGgugaccCGGaGGCACCGGCGGc -3'
miRNA:   3'- -ACGUGG--UGUUau----GCC-CUGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 26583 0.79 0.15958
Target:  5'- cGCGCgGCGGUgugcGCGGGuucgcCACCGGCGGc -3'
miRNA:   3'- aCGUGgUGUUA----UGCCCu----GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 54431 0.79 0.163894
Target:  5'- cUGcCGCCGCGucgGCGGGAgCACCGGgGGu -3'
miRNA:   3'- -AC-GUGGUGUua-UGCCCU-GUGGCCgCC- -5'
19256 3' -55.9 NC_004684.1 + 40947 0.78 0.168313
Target:  5'- cGUGCCGCcGUAcacCGGGcCACCGGCGGc -3'
miRNA:   3'- aCGUGGUGuUAU---GCCCuGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 15773 0.78 0.168313
Target:  5'- gGCACCuauCGcgGCGGcGACACCGGCa- -3'
miRNA:   3'- aCGUGGu--GUuaUGCC-CUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 59120 0.78 0.182214
Target:  5'- aGCGCCGCAGgucGCGGcGCACgUGGCGGg -3'
miRNA:   3'- aCGUGGUGUUa--UGCCcUGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 12619 0.77 0.192038
Target:  5'- cGCACCu---UGCGGG-CACCGGCGa -3'
miRNA:   3'- aCGUGGuguuAUGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 59997 0.76 0.224332
Target:  5'- cGCGCCGCAGUAUuGGACGgCgcaGGCGGg -3'
miRNA:   3'- aCGUGGUGUUAUGcCCUGUgG---CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 43199 0.76 0.236682
Target:  5'- gGCACCGCAGgcaccggcauuuuggGCGGcGGCACCGccuGCGGa -3'
miRNA:   3'- aCGUGGUGUUa--------------UGCC-CUGUGGC---CGCC- -5'
19256 3' -55.9 NC_004684.1 + 57085 0.76 0.252755
Target:  5'- gGCGCgCACAucgGUGCGGGcgaccucuggcgcgACACCGGCGu -3'
miRNA:   3'- aCGUG-GUGU---UAUGCCC--------------UGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 51902 0.75 0.273758
Target:  5'- gGCACCgaacucgGCGA-ACGGGugGCUGGUGGu -3'
miRNA:   3'- aCGUGG-------UGUUaUGCCCugUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 38966 0.75 0.280602
Target:  5'- aGCACCGCAccgagguguucgcGcGCGGGuccaACACCGGCGu -3'
miRNA:   3'- aCGUGGUGU-------------UaUGCCC----UGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 41062 0.75 0.281294
Target:  5'- cGCACCGCGucggcaauCGGcGGC-CCGGCGGc -3'
miRNA:   3'- aCGUGGUGUuau-----GCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 25931 0.75 0.281294
Target:  5'- aGCACCGC----CGGGgucagcccacugACACCGGCGGc -3'
miRNA:   3'- aCGUGGUGuuauGCCC------------UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 57523 0.74 0.301949
Target:  5'- cUGCGCgGCGu--CGGGAuccggcggcagcuCACCGGCGGc -3'
miRNA:   3'- -ACGUGgUGUuauGCCCU-------------GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 8802 0.74 0.310084
Target:  5'- aGCACCGCGcauGUACGaGGcGCugCGGCGc -3'
miRNA:   3'- aCGUGGUGU---UAUGC-CC-UGugGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.