miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 65772 0.68 0.285437
Target:  5'- cCGCgCGCCGGUGggCGCGcgcacgGCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACgaGCGCa-----CGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 65432 0.66 0.367776
Target:  5'- gCGCugCGCUGGcgUGCggCGCGcgGCCACCg- -3'
miRNA:   3'- -GCG--GCGGCC--ACGa-GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 64803 0.67 0.328429
Target:  5'- aCGCCGuuGGUGCugucgaguUCGUGgGCCAUg-- -3'
miRNA:   3'- -GCGGCggCCACG--------AGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 63850 0.71 0.160997
Target:  5'- aCGCUGUCGGUGCcacgugCGCGgugGCgGCCUu -3'
miRNA:   3'- -GCGGCGGCCACGa-----GCGCa--CGgUGGAu -5'
19256 5' -63.1 NC_004684.1 + 62736 0.66 0.384397
Target:  5'- uCGUCGUgGGUGCUgGgaCGUGCCAUg-- -3'
miRNA:   3'- -GCGGCGgCCACGAgC--GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 62490 0.66 0.384397
Target:  5'- uGCCGCCGaGgccGgUgGCGaccagGCCGCCUGa -3'
miRNA:   3'- gCGGCGGC-Ca--CgAgCGCa----CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 61457 1.06 0.000362
Target:  5'- uCGCCGCCGGUGCUCGCGUGCCACCUAg -3'
miRNA:   3'- -GCGGCGGCCACGAGCGCACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 61359 0.67 0.320943
Target:  5'- gGCCGCgaGGcGCUgGCGgccuaaagGCCACCg- -3'
miRNA:   3'- gCGGCGg-CCaCGAgCGCa-------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 59403 0.71 0.160997
Target:  5'- uCGCUGCacuugcaGGUGUUgCGCacGUGCCGCCUGg -3'
miRNA:   3'- -GCGGCGg------CCACGA-GCG--CACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 58164 0.67 0.313585
Target:  5'- gGgaGCCGGUGCgacUGUGCCGCCa- -3'
miRNA:   3'- gCggCGGCCACGagcGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 57942 0.68 0.272127
Target:  5'- cCGaCCGCCugcGGUGCUCGC-UGCgGCUg- -3'
miRNA:   3'- -GC-GGCGG---CCACGAGCGcACGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 56806 0.67 0.313585
Target:  5'- uGCCGUCGGUGaCggaCGUG-GCCAUCg- -3'
miRNA:   3'- gCGGCGGCCAC-Ga--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 56590 0.7 0.197509
Target:  5'- aGCCGCCGGaUGC-CGCuacgGUGCCgacGCCg- -3'
miRNA:   3'- gCGGCGGCC-ACGaGCG----CACGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 55740 0.7 0.20255
Target:  5'- gGCCGCC-GUGCUgGCGUgGCCgauGCCg- -3'
miRNA:   3'- gCGGCGGcCACGAgCGCA-CGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 55412 0.7 0.212969
Target:  5'- uGCCGUCGGUGCcgccggUCGCGgUGUgCGCCg- -3'
miRNA:   3'- gCGGCGGCCACG------AGCGC-ACG-GUGGau -5'
19256 5' -63.1 NC_004684.1 + 53535 0.67 0.306356
Target:  5'- uGUCGUCGGUGCg-GCGUGCCu---- -3'
miRNA:   3'- gCGGCGGCCACGagCGCACGGuggau -5'
19256 5' -63.1 NC_004684.1 + 51698 0.67 0.299255
Target:  5'- aCGauGCCGGUgGCgUCG-GUGCCGCCg- -3'
miRNA:   3'- -GCggCGGCCA-CG-AGCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 51611 0.69 0.241039
Target:  5'- aCGuuGCCGGUG-UCGCcgccgcgauagGUGCCGCUg- -3'
miRNA:   3'- -GCggCGGCCACgAGCG-----------CACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 49061 0.66 0.375194
Target:  5'- gGCUcgGCCaGGUGCUCGUcgcccacGUcGCCGCCa- -3'
miRNA:   3'- gCGG--CGG-CCACGAGCG-------CA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 49048 0.68 0.265662
Target:  5'- gCGCCGCCGGUcgGCUC-CGgggGCggCACCg- -3'
miRNA:   3'- -GCGGCGGCCA--CGAGcGCa--CG--GUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.