miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 48972 0.79 0.041873
Target:  5'- gGCCGCCGGUGCgccCGCcggGCCGCCg- -3'
miRNA:   3'- gCGGCGGCCACGa--GCGca-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 49048 0.68 0.265662
Target:  5'- gCGCCGCCGGUcgGCUC-CGgggGCggCACCg- -3'
miRNA:   3'- -GCGGCGGCCA--CGAGcGCa--CG--GUGGau -5'
19256 5' -63.1 NC_004684.1 + 25126 0.68 0.278719
Target:  5'- uGCCcagguGUCGGUcuuGCUCGCGUcCCACCa- -3'
miRNA:   3'- gCGG-----CGGCCA---CGAGCGCAcGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 14487 0.66 0.38778
Target:  5'- aCGCCGCC-GUGCUgGCcgGacgcuccugggugcaUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcCACGAgCG--C---------------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25785 0.71 0.156887
Target:  5'- gGCCGCCGGa-CUCGUG-GCCgACCUGc -3'
miRNA:   3'- gCGGCGGCCacGAGCGCaCGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 748 0.71 0.178426
Target:  5'- cCGCCGCCGaG-GCcaUCGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGC-CaCG--AGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 55740 0.7 0.20255
Target:  5'- gGCCGCC-GUGCUgGCGUgGCCgauGCCg- -3'
miRNA:   3'- gCGGCGGcCACGAgCGCA-CGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 48666 0.7 0.207703
Target:  5'- aCGCCGCCacauccaGCgagaGCGUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcca----CGag--CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40796 0.69 0.223844
Target:  5'- cCGCCGCCGGUgGCgaaccCGCGcacaCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCA-CGa----GCGCac--GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 45166 0.68 0.265662
Target:  5'- uCG-CGCgGGUGCcgUCGCGcagggagGCCACCUGc -3'
miRNA:   3'- -GCgGCGgCCACG--AGCGCa------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 40544 0.69 0.229457
Target:  5'- uGCuCGCUGGUGCUCGaccgGuCCACCa- -3'
miRNA:   3'- gCG-GCGGCCACGAGCgca-C-GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 35661 0.69 0.218349
Target:  5'- gGCCGUCGGcgGCggUGUGUcGCCACCg- -3'
miRNA:   3'- gCGGCGGCCa-CGa-GCGCA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 1571 0.76 0.068641
Target:  5'- aGCCGCCGGUGcCUC-CGgGUCACCUGc -3'
miRNA:   3'- gCGGCGGCCAC-GAGcGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 51611 0.69 0.241039
Target:  5'- aCGuuGCCGGUG-UCGCcgccgcgauagGUGCCGCUg- -3'
miRNA:   3'- -GCggCGGCCACgAGCG-----------CACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7331 0.73 0.130681
Target:  5'- gGCCGCCGG-GC-CGCGcGCCACg-- -3'
miRNA:   3'- gCGGCGGCCaCGaGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 55412 0.7 0.212969
Target:  5'- uGCCGUCGGUGCcgccggUCGCGgUGUgCGCCg- -3'
miRNA:   3'- gCGGCGGCCACG------AGCGC-ACG-GUGGau -5'
19256 5' -63.1 NC_004684.1 + 22853 0.68 0.265662
Target:  5'- uGCCGaCCGG-GUUCGUccggGCCACCa- -3'
miRNA:   3'- gCGGC-GGCCaCGAGCGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25449 0.68 0.272128
Target:  5'- gGCCGuuGGUGC-CGCcguUGaCCGCCUu -3'
miRNA:   3'- gCGGCggCCACGaGCGc--AC-GGUGGAu -5'
19256 5' -63.1 NC_004684.1 + 20232 0.72 0.145118
Target:  5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3'
miRNA:   3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 56590 0.7 0.197509
Target:  5'- aGCCGCCGGaUGC-CGCuacgGUGCCgacGCCg- -3'
miRNA:   3'- gCGGCGGCC-ACGaGCG----CACGG---UGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.