miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 4038 0.66 0.349282
Target:  5'- cAUGGCGacggUGGCCUacCGGCCaucgccgggugaccGGGUGgUGg -3'
miRNA:   3'- -UGCCGCa---ACCGGA--GCCGG--------------UCCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 50367 0.66 0.35484
Target:  5'- gGCGGCGUucuucacccgcucggUGcGCaugUCGGCgGGGUGCUu -3'
miRNA:   3'- -UGCCGCA---------------AC-CGg--AGCCGgUCCGCGAc -5'
19258 3' -63.2 NC_004684.1 + 52690 0.66 0.354042
Target:  5'- cCGGU--UGGCCagguccucgcgcccgUCGGCCucgccacgcucguAGGCGCUGu -3'
miRNA:   3'- uGCCGcaACCGG---------------AGCCGG-------------UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 59768 0.66 0.343786
Target:  5'- cACGGCGagcUGGCuCUcgacCGGCCAGGagGCg- -3'
miRNA:   3'- -UGCCGCa--ACCG-GA----GCCGGUCCg-CGac -5'
19258 3' -63.2 NC_004684.1 + 8177 0.66 0.336044
Target:  5'- cCGGgGgc-GCgCUgGGCCAGGCGCa- -3'
miRNA:   3'- uGCCgCaacCG-GAgCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 20320 0.66 0.359653
Target:  5'- gGCGGCGgcGGCCaUCGagaucggcgucGCCcGGUGCa- -3'
miRNA:   3'- -UGCCGCaaCCGG-AGC-----------CGGuCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 28071 0.66 0.351656
Target:  5'- cCGGCGgugUGGCCg-GGCCGccGCGCg- -3'
miRNA:   3'- uGCCGCa--ACCGGagCCGGUc-CGCGac -5'
19258 3' -63.2 NC_004684.1 + 1033 0.66 0.339125
Target:  5'- cGCGGCGUggGGCCagaaauggCGGCacCGguugugcuggcuggcGGCGCUGg -3'
miRNA:   3'- -UGCCGCAa-CCGGa-------GCCG--GU---------------CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 49661 0.66 0.359653
Target:  5'- cACGGCG-UGGaCUCGGCCcauucGGCGa-- -3'
miRNA:   3'- -UGCCGCaACCgGAGCCGGu----CCGCgac -5'
19258 3' -63.2 NC_004684.1 + 66460 0.66 0.357241
Target:  5'- gGCGGCGUUGucuccacGCCgccacccgguggCGGCUAGGCcUUGg -3'
miRNA:   3'- -UGCCGCAAC-------CGGa-----------GCCGGUCCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 60303 0.66 0.351656
Target:  5'- uCGGCGgccuccagGGCCUCGGCaauGCGUUc -3'
miRNA:   3'- uGCCGCaa------CCGGAGCCGgucCGCGAc -5'
19258 3' -63.2 NC_004684.1 + 26390 0.66 0.376025
Target:  5'- gGCGGCGaucUGGCCaacgCcGCCAccGGCGCg- -3'
miRNA:   3'- -UGCCGCa--ACCGGa---GcCGGU--CCGCGac -5'
19258 3' -63.2 NC_004684.1 + 5858 0.66 0.359653
Target:  5'- -aGGCGUgcgacUGGCa--GGCCGGGCaGCa- -3'
miRNA:   3'- ugCCGCA-----ACCGgagCCGGUCCG-CGac -5'
19258 3' -63.2 NC_004684.1 + 6365 0.66 0.367776
Target:  5'- gGCGGCGaUGGCCUgCGcguuGCgCAGcGUGUUGg -3'
miRNA:   3'- -UGCCGCaACCGGA-GC----CG-GUC-CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 61500 0.66 0.350863
Target:  5'- -aGGCGgcGGCgCUCGaugcgcGCCagcagugacgugcAGGCGCUGg -3'
miRNA:   3'- ugCCGCaaCCG-GAGC------CGG-------------UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 10792 0.66 0.359653
Target:  5'- gACGGCGUcGGCaccguagCGGCauccGGCgGCUGg -3'
miRNA:   3'- -UGCCGCAaCCGga-----GCCGgu--CCG-CGAC- -5'
19258 3' -63.2 NC_004684.1 + 32673 0.66 0.367776
Target:  5'- gGCGGCGgcaUGGCUaCGGCCucGGCa--- -3'
miRNA:   3'- -UGCCGCa--ACCGGaGCCGGu-CCGcgac -5'
19258 3' -63.2 NC_004684.1 + 41778 0.66 0.376025
Target:  5'- -gGGCGUacGGacgCGGCCAGGUGCc- -3'
miRNA:   3'- ugCCGCAa-CCggaGCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 25052 0.66 0.376025
Target:  5'- uUGGCGauguaggUGGCCagggCGGCCGGGuUGgUGg -3'
miRNA:   3'- uGCCGCa------ACCGGa---GCCGGUCC-GCgAC- -5'
19258 3' -63.2 NC_004684.1 + 12022 0.66 0.359653
Target:  5'- gGCGGCGgUGGCCaaGGCCA--UGCUc -3'
miRNA:   3'- -UGCCGCaACCGGagCCGGUccGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.