miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 1033 0.66 0.339125
Target:  5'- cGCGGCGUggGGCCagaaauggCGGCacCGguugugcuggcuggcGGCGCUGg -3'
miRNA:   3'- -UGCCGCAa-CCGGa-------GCCG--GU---------------CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 1211 0.68 0.285437
Target:  5'- cGCGGCGUcgacuucgucGGCCUCGGC--GGC-CUGg -3'
miRNA:   3'- -UGCCGCAa---------CCGGAGCCGguCCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 1976 0.66 0.376025
Target:  5'- cCGGCGguaUGGacagCUCgaacugcuGGCCuGGGCGCUGg -3'
miRNA:   3'- uGCCGCa--ACCg---GAG--------CCGG-UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 2045 0.67 0.313585
Target:  5'- gUGGCccuGggGGCCgccaucgUGGCCugccuGGCGCUGg -3'
miRNA:   3'- uGCCG---CaaCCGGa------GCCGGu----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 2267 0.68 0.265022
Target:  5'- cGCGGCGgcGggcauugccgccaGCCUgGGCCAcgacgcGGUGCUGa -3'
miRNA:   3'- -UGCCGCaaC-------------CGGAgCCGGU------CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 4038 0.66 0.349282
Target:  5'- cAUGGCGacggUGGCCUacCGGCCaucgccgggugaccGGGUGgUGg -3'
miRNA:   3'- -UGCCGCa---ACCGGA--GCCGG--------------UCCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 4547 0.69 0.235188
Target:  5'- cCGGCGcugUGGCUgauugccgaGGCCaucgAGGCGCUGc -3'
miRNA:   3'- uGCCGCa--ACCGGag-------CCGG----UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 5858 0.66 0.359653
Target:  5'- -aGGCGUgcgacUGGCa--GGCCGGGCaGCa- -3'
miRNA:   3'- ugCCGCA-----ACCGgagCCGGUCCG-CGac -5'
19258 3' -63.2 NC_004684.1 + 6079 0.7 0.187754
Target:  5'- -gGGCGgcGGCC-CGGCgGcGGUGCUGc -3'
miRNA:   3'- ugCCGCaaCCGGaGCCGgU-CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 6164 0.66 0.36046
Target:  5'- aAUGGCGaggugUGGCUgaucgccgacgcgaaCGGCCAGGUGUa- -3'
miRNA:   3'- -UGCCGCa----ACCGGa--------------GCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 6365 0.66 0.367776
Target:  5'- gGCGGCGaUGGCCUgCGcguuGCgCAGcGUGUUGg -3'
miRNA:   3'- -UGCCGCaACCGGA-GC----CG-GUC-CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 6428 0.7 0.182571
Target:  5'- gGCGGCGUgaacGCCUucgcgcuUGGCCgAGGCGCa- -3'
miRNA:   3'- -UGCCGCAac--CGGA-------GCCGG-UCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 7550 0.69 0.241039
Target:  5'- cGCGGUGcUGGaC-CGGCCccggguGGCGCUGg -3'
miRNA:   3'- -UGCCGCaACCgGaGCCGGu-----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 8177 0.66 0.336044
Target:  5'- cCGGgGgc-GCgCUgGGCCAGGCGCa- -3'
miRNA:   3'- uGCCgCaacCG-GAgCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 8438 0.66 0.376025
Target:  5'- uCGGCGgacagGGCC-CGGCgcaAGGC-CUGg -3'
miRNA:   3'- uGCCGCaa---CCGGaGCCGg--UCCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 9443 0.72 0.148949
Target:  5'- cAUGGUGgaGGCCcUGGuguuCCGGGCGCUGg -3'
miRNA:   3'- -UGCCGCaaCCGGaGCC----GGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 10053 0.68 0.272127
Target:  5'- gGCGGgGUcuuuugucugugUGGCCUaCGGCCAGucgaccgggcaGgGCUGg -3'
miRNA:   3'- -UGCCgCA------------ACCGGA-GCCGGUC-----------CgCGAC- -5'
19258 3' -63.2 NC_004684.1 + 10497 0.72 0.145118
Target:  5'- gGCGGCcUUGGCCUCcucGCCAaGGUGCg- -3'
miRNA:   3'- -UGCCGcAACCGGAGc--CGGU-CCGCGac -5'
19258 3' -63.2 NC_004684.1 + 10792 0.66 0.359653
Target:  5'- gACGGCGUcGGCaccguagCGGCauccGGCgGCUGg -3'
miRNA:   3'- -UGCCGCAaCCGga-----GCCGgu--CCG-CGAC- -5'
19258 3' -63.2 NC_004684.1 + 11447 0.68 0.278719
Target:  5'- cGCGGCGUcGGCgUCGGCCu--CGCc- -3'
miRNA:   3'- -UGCCGCAaCCGgAGCCGGuccGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.