miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 6428 0.7 0.182571
Target:  5'- gGCGGCGUgaacGCCUucgcgcuUGGCCgAGGCGCa- -3'
miRNA:   3'- -UGCCGCAac--CGGA-------GCCGG-UCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 67084 0.72 0.134161
Target:  5'- -gGGCGUUGGCCUCGGC--GGCcaGCg- -3'
miRNA:   3'- ugCCGCAACCGGAGCCGguCCG--CGac -5'
19258 3' -63.2 NC_004684.1 + 61338 0.72 0.145118
Target:  5'- gGCGGCGUaGGUggCGGCCAGGUGa-- -3'
miRNA:   3'- -UGCCGCAaCCGgaGCCGGUCCGCgac -5'
19258 3' -63.2 NC_004684.1 + 9443 0.72 0.148949
Target:  5'- cAUGGUGgaGGCCcUGGuguuCCGGGCGCUGg -3'
miRNA:   3'- -UGCCGCaaCCGGaGCC----GGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 51382 0.71 0.151684
Target:  5'- -aGGCcUUGGCCgucguccacaaugaUCGGCCGGGCGUc- -3'
miRNA:   3'- ugCCGcAACCGG--------------AGCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 57677 0.71 0.152871
Target:  5'- cACaGCaggUGGCCaUCGGCCAGGCaugGCUGc -3'
miRNA:   3'- -UGcCGca-ACCGG-AGCCGGUCCG---CGAC- -5'
19258 3' -63.2 NC_004684.1 + 63541 0.71 0.165205
Target:  5'- -gGGCG-UGGCgCUCGGCCuccucGGcCGCUGc -3'
miRNA:   3'- ugCCGCaACCG-GAGCCGGu----CC-GCGAC- -5'
19258 3' -63.2 NC_004684.1 + 17259 0.71 0.169511
Target:  5'- gGCGGCGcUGGUccugcaacugCUCGGC--GGCGCUGg -3'
miRNA:   3'- -UGCCGCaACCG----------GAGCCGguCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 57160 0.71 0.178426
Target:  5'- gGCGGCGgUGGCCgacgCGcacGCuCGGGCGCa- -3'
miRNA:   3'- -UGCCGCaACCGGa---GC---CG-GUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 22586 0.73 0.12397
Target:  5'- gGCGGUGUUcggcuucaaaGGCCUCggugaGGCCGuuacGGCGCUGu -3'
miRNA:   3'- -UGCCGCAA----------CCGGAG-----CCGGU----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 40357 0.73 0.120736
Target:  5'- gGCGGCGgccuUGGCCUUgggGGCCucGGCGgUGg -3'
miRNA:   3'- -UGCCGCa---ACCGGAG---CCGGu-CCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 47628 0.74 0.100208
Target:  5'- uCGGCGUcGGCCUugucguggaCGGCCAgugcGGCGUUGg -3'
miRNA:   3'- uGCCGCAaCCGGA---------GCCGGU----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 60213 0.83 0.019758
Target:  5'- uCGGCGUUGGCCUCGGCguugUAGGUGCa- -3'
miRNA:   3'- uGCCGCAACCGGAGCCG----GUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 66014 0.79 0.03962
Target:  5'- gGCGGCcUUGGCgUCGGCCAgGGUGUUGg -3'
miRNA:   3'- -UGCCGcAACCGgAGCCGGU-CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 55222 0.76 0.066795
Target:  5'- -aGGCGUUGGCaccgCGcGCCaAGGCGCUGc -3'
miRNA:   3'- ugCCGCAACCGga--GC-CGG-UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 25857 0.76 0.066795
Target:  5'- gGCGGCcuGUUcaacGGCCUCGGCCAGGCcggGCa- -3'
miRNA:   3'- -UGCCG--CAA----CCGGAGCCGGUCCG---CGac -5'
19258 3' -63.2 NC_004684.1 + 42551 0.76 0.068641
Target:  5'- gACGGCGUUcGGCUUCGGCguGGcCGCc- -3'
miRNA:   3'- -UGCCGCAA-CCGGAGCCGguCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 52917 0.74 0.092458
Target:  5'- cACGGCGgcgUGGCCgcauuccaGG-CAGGCGCUGc -3'
miRNA:   3'- -UGCCGCa--ACCGGag------CCgGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 65760 0.74 0.092458
Target:  5'- -gGGCGUUGGCCgccgCGcGCCgguGGGCGCg- -3'
miRNA:   3'- ugCCGCAACCGGa---GC-CGG---UCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 60923 0.74 0.092458
Target:  5'- cACGGCGUcgcacGCCUCGGCCAGuucgacaugcGUGCUGu -3'
miRNA:   3'- -UGCCGCAac---CGGAGCCGGUC----------CGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.