miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 64229 1.08 0.000265
Target:  5'- cACGGCGUUGGCCUCGGCCAGGCGCUGg -3'
miRNA:   3'- -UGCCGCAACCGGAGCCGGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 60213 0.83 0.019758
Target:  5'- uCGGCGUUGGCCUCGGCguugUAGGUGCa- -3'
miRNA:   3'- uGCCGCAACCGGAGCCG----GUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 66014 0.79 0.03962
Target:  5'- gGCGGCcUUGGCgUCGGCCAgGGUGUUGg -3'
miRNA:   3'- -UGCCGcAACCGgAGCCGGU-CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 55222 0.76 0.066795
Target:  5'- -aGGCGUUGGCaccgCGcGCCaAGGCGCUGc -3'
miRNA:   3'- ugCCGCAACCGga--GC-CGG-UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 25857 0.76 0.066795
Target:  5'- gGCGGCcuGUUcaacGGCCUCGGCCAGGCcggGCa- -3'
miRNA:   3'- -UGCCG--CAA----CCGGAGCCGGUCCG---CGac -5'
19258 3' -63.2 NC_004684.1 + 42551 0.76 0.068641
Target:  5'- gACGGCGUUcGGCUUCGGCguGGcCGCc- -3'
miRNA:   3'- -UGCCGCAA-CCGGAGCCGguCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 61338 0.75 0.078631
Target:  5'- cGCGGCGUgguUGGUcagCUgGGCCgcgAGGCGCUGg -3'
miRNA:   3'- -UGCCGCA---ACCG---GAgCCGG---UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 67009 0.75 0.083005
Target:  5'- cGCGGggcCGUcGGUCUCGGCCAGGuCGCg- -3'
miRNA:   3'- -UGCC---GCAaCCGGAGCCGGUCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 65760 0.74 0.092458
Target:  5'- -gGGCGUUGGCCgccgCGcGCCgguGGGCGCg- -3'
miRNA:   3'- ugCCGCAACCGGa---GC-CGG---UCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 60923 0.74 0.092458
Target:  5'- cACGGCGUcgcacGCCUCGGCCAGuucgacaugcGUGCUGu -3'
miRNA:   3'- -UGCCGCAac---CGGAGCCGGUC----------CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 52917 0.74 0.092458
Target:  5'- cACGGCGgcgUGGCCgcauuccaGG-CAGGCGCUGc -3'
miRNA:   3'- -UGCCGCa--ACCGGag------CCgGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 47628 0.74 0.100208
Target:  5'- uCGGCGUcGGCCUugucguggaCGGCCAgugcGGCGUUGg -3'
miRNA:   3'- uGCCGCAaCCGGA---------GCCGGU----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 54523 0.73 0.111498
Target:  5'- cCGGCGgcGGCCUCGGCgGuGGCGg-- -3'
miRNA:   3'- uGCCGCaaCCGGAGCCGgU-CCGCgac -5'
19258 3' -63.2 NC_004684.1 + 29778 0.73 0.120736
Target:  5'- gACGGCGUUcGGCaugggCGGCCGGGCccGCa- -3'
miRNA:   3'- -UGCCGCAA-CCGga---GCCGGUCCG--CGac -5'
19258 3' -63.2 NC_004684.1 + 40357 0.73 0.120736
Target:  5'- gGCGGCGgccuUGGCCUUgggGGCCucGGCGgUGg -3'
miRNA:   3'- -UGCCGCa---ACCGGAG---CCGGu-CCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 22586 0.73 0.12397
Target:  5'- gGCGGUGUUcggcuucaaaGGCCUCggugaGGCCGuuacGGCGCUGu -3'
miRNA:   3'- -UGCCGCAA----------CCGGAG-----CCGGU----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 24133 0.72 0.130681
Target:  5'- cGCGGCGacaUGGCCgugcucucCGGCCcGcGCGCUGg -3'
miRNA:   3'- -UGCCGCa--ACCGGa-------GCCGGuC-CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 67084 0.72 0.134161
Target:  5'- -gGGCGUUGGCCUCGGC--GGCcaGCg- -3'
miRNA:   3'- ugCCGCAACCGGAGCCGguCCG--CGac -5'
19258 3' -63.2 NC_004684.1 + 36170 0.72 0.137726
Target:  5'- aAUGGCGUcaccGGCgUCGGCCAGGuCGUc- -3'
miRNA:   3'- -UGCCGCAa---CCGgAGCCGGUCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 61338 0.72 0.145118
Target:  5'- gGCGGCGUaGGUggCGGCCAGGUGa-- -3'
miRNA:   3'- -UGCCGCAaCCGgaGCCGGUCCGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.