miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 66653 0.67 0.670192
Target:  5'- uGGCCUCGgc----GGCGGCccgGUCACCg -3'
miRNA:   3'- -CCGGAGCaagaccUUGCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 65430 0.69 0.532216
Target:  5'- aGGCgCU-GcgCUGGcguGCGGCgcgcgGCCACCg -3'
miRNA:   3'- -CCG-GAgCaaGACCu--UGCCGa----CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64969 0.83 0.073358
Target:  5'- cGGCCUUGUcgccggUCUGGAACGG-UGCCACg -3'
miRNA:   3'- -CCGGAGCA------AGACCUUGCCgACGGUGg -5'
19259 5' -56.4 NC_004684.1 + 64771 0.66 0.733116
Target:  5'- aGGCgUCGgUCUGGcuguCGGCgaaGCUgACCa -3'
miRNA:   3'- -CCGgAGCaAGACCuu--GCCGa--CGG-UGG- -5'
19259 5' -56.4 NC_004684.1 + 64596 0.65 0.750416
Target:  5'- uGGCCUCGgcgaacucgaacucgCUGGcguccaGGCUGgaCACCu -3'
miRNA:   3'- -CCGGAGCaa-------------GACCuug---CCGACg-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 64495 1.14 0.000467
Target:  5'- uGGCCUCGUUCUGGAACGGCUGCCACCa -3'
miRNA:   3'- -CCGGAGCAAGACCUUGCCGACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64237 0.71 0.423954
Target:  5'- uGGCCUCGgccaggcgCUGGGuguUGGC-GCaCACCa -3'
miRNA:   3'- -CCGGAGCaa------GACCUu--GCCGaCG-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 64052 0.72 0.387949
Target:  5'- cGCCUgGaacgccgaaugcUUCUGGugcaguAGCGGCUcGCCACCg -3'
miRNA:   3'- cCGGAgC------------AAGACC------UUGCCGA-CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 63522 0.67 0.691411
Target:  5'- aGGCCUUGgcaCUGcGcAGCGGCgUGCCuuCg -3'
miRNA:   3'- -CCGGAGCaa-GAC-C-UUGCCG-ACGGugG- -5'
19259 5' -56.4 NC_004684.1 + 63055 0.66 0.722807
Target:  5'- cGCCUaacggUUGGuGGCGGCuaccgUGCCGCCg -3'
miRNA:   3'- cCGGAgcaa-GACC-UUGCCG-----ACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 60220 0.7 0.511677
Target:  5'- uGGCCUCGgcgUUguaGGugcacccgcaGGCGGUgGCCACCu -3'
miRNA:   3'- -CCGGAGCa--AGa--CC----------UUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 60050 0.68 0.606027
Target:  5'- aGGCCUCGcacUCgUGGcgcGCGGCccgGCgGCCc -3'
miRNA:   3'- -CCGGAGCa--AG-ACCu--UGCCGa--CGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 59466 0.71 0.430459
Target:  5'- aGGCCUUGc-CUGGGuucuccaccggcugGCuGGCgGCCACCa -3'
miRNA:   3'- -CCGGAGCaaGACCU--------------UG-CCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 57821 0.66 0.743329
Target:  5'- cGGCCUgGUcCcGG--CGGUgcugGCCGCCg -3'
miRNA:   3'- -CCGGAgCAaGaCCuuGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 57582 0.67 0.638133
Target:  5'- uGGCCUUGagCgu---CGGgUGCCACCg -3'
miRNA:   3'- -CCGGAGCaaGaccuuGCCgACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 55353 0.69 0.553045
Target:  5'- cGCCUCcugCUGGucgagcAUGGCcuugGCCACCg -3'
miRNA:   3'- cCGGAGcaaGACCu-----UGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 54960 0.67 0.680823
Target:  5'- uGCUUCGcgCgggGuGAACGGgUGgCCGCCg -3'
miRNA:   3'- cCGGAGCaaGa--C-CUUGCCgAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 54530 0.68 0.616719
Target:  5'- cGGCCUCGgc--GGuGGCGGCcucgGCCuCCg -3'
miRNA:   3'- -CCGGAGCaagaCC-UUGCCGa---CGGuGG- -5'
19259 5' -56.4 NC_004684.1 + 54128 0.66 0.701944
Target:  5'- cGGCCaccagCGcgCUGGcggucACGGCcugGCCACg -3'
miRNA:   3'- -CCGGa----GCaaGACCu----UGCCGa--CGGUGg -5'
19259 5' -56.4 NC_004684.1 + 52504 0.66 0.701944
Target:  5'- aGGUgUCcagGUUCUGcGGACGGgUGCCGg- -3'
miRNA:   3'- -CCGgAG---CAAGAC-CUUGCCgACGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.