miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 67216 0.66 0.650726
Target:  5'- gGUGGUGGUCCcGAccaacCCGGuCACCGguuCGAc -3'
miRNA:   3'- -CGCCACUAGGaCU-----GGCC-GUGGU---GCUa -5'
19261 5' -57.6 NC_004684.1 + 67010 1.08 0.000948
Target:  5'- gGCGGUGAUCCUGACCGGCACCACGAUg -3'
miRNA:   3'- -CGCCACUAGGACUGGCCGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 64938 0.72 0.294074
Target:  5'- gGCGGUGAgcgCCUGGCgGGCggugGCC-CGGUu -3'
miRNA:   3'- -CGCCACUa--GGACUGgCCG----UGGuGCUA- -5'
19261 5' -57.6 NC_004684.1 + 56877 0.68 0.503415
Target:  5'- aGCGGUGcgCCUGACCGu--CgGCGGc -3'
miRNA:   3'- -CGCCACuaGGACUGGCcguGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 56429 0.66 0.650726
Target:  5'- uCGG-GGUCCaaggaGGCCGcCACCACGAUc -3'
miRNA:   3'- cGCCaCUAGGa----CUGGCcGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 55606 0.72 0.331532
Target:  5'- aCGGUGG-CCUGGUCGGC-CCACGGg -3'
miRNA:   3'- cGCCACUaGGACUGGCCGuGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 53773 0.69 0.435058
Target:  5'- gGUGGUcgGGUCCcaGACCGGCGCgGCGc- -3'
miRNA:   3'- -CGCCA--CUAGGa-CUGGCCGUGgUGCua -5'
19261 5' -57.6 NC_004684.1 + 53717 0.69 0.473498
Target:  5'- cCGGccaccauGUCCUgGACCGuGCGCCACGAg -3'
miRNA:   3'- cGCCac-----UAGGA-CUGGC-CGUGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 49027 0.7 0.425733
Target:  5'- cCGGUGAUgUcGAgCGGCACCGCGc- -3'
miRNA:   3'- cGCCACUAgGaCUgGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 48022 0.66 0.650726
Target:  5'- aGCGGUG-UCCUcGGCCauguuGCGCCGCu-- -3'
miRNA:   3'- -CGCCACuAGGA-CUGGc----CGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 46698 0.67 0.586636
Target:  5'- uGCGGUGGcgcgcCCUGugCGagcGCGCCAcCGAc -3'
miRNA:   3'- -CGCCACUa----GGACugGC---CGUGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 45893 0.66 0.629331
Target:  5'- cCGGUGccuuGUCCucugcuUGACCGGCGCguUGAa -3'
miRNA:   3'- cGCCAC----UAGG------ACUGGCCGUGguGCUa -5'
19261 5' -57.6 NC_004684.1 + 41586 0.66 0.640032
Target:  5'- gGCGGcGGcauuUCCUGGCgcaGGUcgGCCACGAg -3'
miRNA:   3'- -CGCCaCU----AGGACUGg--CCG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 40714 0.67 0.576032
Target:  5'- gGCGGUGG-CCgggacGACCaGCGCgGCGGg -3'
miRNA:   3'- -CGCCACUaGGa----CUGGcCGUGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 40384 0.66 0.640032
Target:  5'- gGCGGUGGcggCCUucggcaGGCCGGUcaGCCACu-- -3'
miRNA:   3'- -CGCCACUa--GGA------CUGGCCG--UGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 38813 0.66 0.62933
Target:  5'- gGCGGUGcccgCCUGG-CGGUGCC-CGAc -3'
miRNA:   3'- -CGCCACua--GGACUgGCCGUGGuGCUa -5'
19261 5' -57.6 NC_004684.1 + 38144 0.67 0.553915
Target:  5'- gGCGGUGAUgCCUugaauggGGCCG-CGCCACa-- -3'
miRNA:   3'- -CGCCACUA-GGA-------CUGGCcGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 37322 0.67 0.565472
Target:  5'- uCGGUGAguggCCgggaGGCCGGUACCAgGc- -3'
miRNA:   3'- cGCCACUa---GGa---CUGGCCGUGGUgCua -5'
19261 5' -57.6 NC_004684.1 + 36108 0.68 0.534124
Target:  5'- cGCGGUGGgugcgCCUG-CUGGCcuucGCCACa-- -3'
miRNA:   3'- -CGCCACUa----GGACuGGCCG----UGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 35716 0.66 0.62933
Target:  5'- aCGGUGA-CCUGACCuGGUucaacaacACCAgCGAc -3'
miRNA:   3'- cGCCACUaGGACUGG-CCG--------UGGU-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.