miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 6568 0.73 0.28699
Target:  5'- aCGGUGAgUCCgUGuCCGGCACCugGu- -3'
miRNA:   3'- cGCCACU-AGG-ACuGGCCGUGGugCua -5'
19261 5' -57.6 NC_004684.1 + 7552 0.67 0.586636
Target:  5'- gGCGGcguucUGGUUCgccuacACCGGCACCGCGc- -3'
miRNA:   3'- -CGCC-----ACUAGGac----UGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 20934 0.67 0.607944
Target:  5'- cGUGGUGGcCCUGGCC--CACCGCGc- -3'
miRNA:   3'- -CGCCACUaGGACUGGccGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 33649 0.66 0.661404
Target:  5'- uCGGgggcGUCCUGGCCGcGCugCGuCGAg -3'
miRNA:   3'- cGCCac--UAGGACUGGC-CGugGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 16179 0.7 0.389656
Target:  5'- -aGGUGAUCCUG-CUGGC--CACGAUg -3'
miRNA:   3'- cgCCACUAGGACuGGCCGugGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 13966 0.7 0.398487
Target:  5'- uCGGUGAcgUCCUGACgcaGGCagACCugGAg -3'
miRNA:   3'- cGCCACU--AGGACUGg--CCG--UGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 49027 0.7 0.425733
Target:  5'- cCGGUGAUgUcGAgCGGCACCGCGc- -3'
miRNA:   3'- cGCCACUAgGaCUgGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 7516 0.69 0.435059
Target:  5'- cGgGGUGGaCCUGcCCGGCACCGa--- -3'
miRNA:   3'- -CgCCACUaGGACuGGCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 56877 0.68 0.503415
Target:  5'- aGCGGUGcgCCUGACCGu--CgGCGGc -3'
miRNA:   3'- -CGCCACuaGGACUGGCcguGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 35433 0.67 0.576032
Target:  5'- gGUGGUGAUC--GGCUGGCgucggauugcgGCCACGGa -3'
miRNA:   3'- -CGCCACUAGgaCUGGCCG-----------UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 17994 0.67 0.554963
Target:  5'- gGUGGUGG-CgCUGACCGaGUACgGCGGc -3'
miRNA:   3'- -CGCCACUaG-GACUGGC-CGUGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 53717 0.69 0.473498
Target:  5'- cCGGccaccauGUCCUgGACCGuGCGCCACGAg -3'
miRNA:   3'- cGCCac-----UAGGA-CUGGC-CGUGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 13652 0.72 0.331532
Target:  5'- uCGGUGuUCCUGGCCgucgaacccGGCACCAUGc- -3'
miRNA:   3'- cGCCACuAGGACUGG---------CCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 37322 0.67 0.565472
Target:  5'- uCGGUGAguggCCgggaGGCCGGUACCAgGc- -3'
miRNA:   3'- cGCCACUa---GGa---CUGGCCGUGGUgCua -5'
19261 5' -57.6 NC_004684.1 + 55606 0.72 0.331532
Target:  5'- aCGGUGG-CCUGGUCGGC-CCACGGg -3'
miRNA:   3'- cGCCACUaGGACUGGCCGuGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 7605 0.69 0.462753
Target:  5'- gGCGGUGuucgccUCCUGGCCGGUcgagagccagcucGCCgugGCGGg -3'
miRNA:   3'- -CGCCACu-----AGGACUGGCCG-------------UGG---UGCUa -5'
19261 5' -57.6 NC_004684.1 + 29740 0.67 0.576032
Target:  5'- -gGGUcGAUgCCUGACCGGgCgGCCAUGGc -3'
miRNA:   3'- cgCCA-CUA-GGACUGGCC-G-UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 7929 0.67 0.597276
Target:  5'- gGUGGUGGacaucgCCgccGACCGGCGCaCACcGGUg -3'
miRNA:   3'- -CGCCACUa-----GGa--CUGGCCGUG-GUG-CUA- -5'
19261 5' -57.6 NC_004684.1 + 20218 0.71 0.35564
Target:  5'- aGCGGcGGcCCUGGCCGcCGCUACGGUg -3'
miRNA:   3'- -CGCCaCUaGGACUGGCcGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 7313 0.7 0.422036
Target:  5'- cCGGUGAaggcccgcacgggCCgccgGGCCGcGCGCCACGAg -3'
miRNA:   3'- cGCCACUa------------GGa---CUGGC-CGUGGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.