miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 69593 1.1 0.000229
Target:  5'- gUCCACGCCAACAGGCCCCCGGCACCCc -3'
miRNA:   3'- -AGGUGCGGUUGUCCGGGGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 69587 0.67 0.376305
Target:  5'- aCCGCcuagcgGCCAACGGGCgCgCGuccacacgggcgcGCGCCCg -3'
miRNA:   3'- aGGUG------CGGUUGUCCGgGgGC-------------CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 69520 0.69 0.260513
Target:  5'- gCCGCGCaa--GGGCaagccgagcagcuCCCCGGcCACCCc -3'
miRNA:   3'- aGGUGCGguugUCCG-------------GGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 68472 0.7 0.231377
Target:  5'- gCCGCcaguCCGAUGcGGCCCCCuGGC-CCCg -3'
miRNA:   3'- aGGUGc---GGUUGU-CCGGGGG-CCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 67445 0.75 0.099297
Target:  5'- cCCG-GCCGggcgGCAGGCaggucuggcaCCCGGCACCCa -3'
miRNA:   3'- aGGUgCGGU----UGUCCGg---------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 67300 0.67 0.345129
Target:  5'- aCCGCGCCGccaagcucguGCuGGCCgaacgcuggCCCGGgguGCCCa -3'
miRNA:   3'- aGGUGCGGU----------UGuCCGG---------GGGCCg--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 67246 0.82 0.033595
Target:  5'- aCCGCGCCGucgaACAGGCCaCCGGCGgCCg -3'
miRNA:   3'- aGGUGCGGU----UGUCCGGgGGCCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 67141 0.72 0.162979
Target:  5'- gCCAUGCUGGCAuuCCCCUGGuCGCCCc -3'
miRNA:   3'- aGGUGCGGUUGUccGGGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 66931 0.68 0.315125
Target:  5'- gUCACGUCAGCGuuGGUCgCgGGCAgCCCg -3'
miRNA:   3'- aGGUGCGGUUGU--CCGGgGgCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 66808 0.69 0.248875
Target:  5'- aUCCugGCCAGCGccGuGCgCaCCGGCcgcaaGCCCa -3'
miRNA:   3'- -AGGugCGGUUGU--C-CGgG-GGCCG-----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 66381 0.68 0.300179
Target:  5'- gCCGuCGUCGACGaugcgcacacggcGGCCCgaCGGCACCa -3'
miRNA:   3'- aGGU-GCGGUUGU-------------CCGGGg-GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 66214 0.66 0.393861
Target:  5'- aCgACGCCAACAagggcuGCCCUCaGuGCAUCCg -3'
miRNA:   3'- aGgUGCGGUUGUc-----CGGGGG-C-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 65959 0.67 0.329126
Target:  5'- ---uCGCCAACuggcGGCCCauuguguCgGGCACCCg -3'
miRNA:   3'- agguGCGGUUGu---CCGGG-------GgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 64689 0.68 0.287134
Target:  5'- aCCAuCGCCucCAGcgaccacugcuuGCUCCaCGGCGCCCc -3'
miRNA:   3'- aGGU-GCGGuuGUC------------CGGGG-GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 64236 0.67 0.345129
Target:  5'- cCCGCGCCGgcccgcagauACAGGUccaCCCUGGCcagGCUg -3'
miRNA:   3'- aGGUGCGGU----------UGUCCG---GGGGCCG---UGGg -5'
19263 5' -62.8 NC_004685.1 + 63252 0.69 0.254946
Target:  5'- gUUCGgGCCAGguGauGCCCuuGGCGCCg -3'
miRNA:   3'- -AGGUgCGGUUguC--CGGGggCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 62995 0.67 0.329875
Target:  5'- gCCGC-CCAccuCGGGCuCCuuGGC-CCCg -3'
miRNA:   3'- aGGUGcGGUu--GUCCG-GGggCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 62353 0.71 0.198993
Target:  5'- uUCCACGCCGgggccaaacgguuGCAGGUCCU--GCACCg -3'
miRNA:   3'- -AGGUGCGGU-------------UGUCCGGGGgcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 62135 0.67 0.329875
Target:  5'- -gCugGCCAccagGCGGGCCaCCuGCACCg -3'
miRNA:   3'- agGugCGGU----UGUCCGGgGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 61897 0.68 0.293944
Target:  5'- cCCGagUGCC-ACAGGCCgUCGcGCACCg -3'
miRNA:   3'- aGGU--GCGGuUGUCCGGgGGC-CGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.