miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 60430 0.66 0.428732
Target:  5'- aUCACGCgGGguuuCGGcGgCCCCGGCgcugGCCCa -3'
miRNA:   3'- aGGUGCGgUU----GUC-CgGGGGCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 58308 0.67 0.345129
Target:  5'- aUUCGCGCCA----GCCUCCGGCgaguggucaccaGCCCu -3'
miRNA:   3'- -AGGUGCGGUugucCGGGGGCCG------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 9960 0.67 0.329875
Target:  5'- aUCCGCGgCGACGuGGacuaCCCG-CACCCg -3'
miRNA:   3'- -AGGUGCgGUUGU-CCgg--GGGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 69593 1.1 0.000229
Target:  5'- gUCCACGCCAACAGGCCCCCGGCACCCc -3'
miRNA:   3'- -AGGUGCGGUUGUCCGGGGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 55933 0.66 0.411067
Target:  5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3'
miRNA:   3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5'
19263 5' -62.8 NC_004685.1 + 24490 0.66 0.402406
Target:  5'- gCCGCGgCGuACAGGUCgCCGGCguGCgCg -3'
miRNA:   3'- aGGUGCgGU-UGUCCGGgGGCCG--UGgG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5'
19263 5' -62.8 NC_004685.1 + 10944 0.66 0.393861
Target:  5'- aCCGCGCCgGGCAGGCgUUcgucaugaugaCGGCcacgACCCg -3'
miRNA:   3'- aGGUGCGG-UUGUCCGgGG-----------GCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 16873 0.67 0.352943
Target:  5'- gUCCAU-CCAGaagaAGGCCCCCgcuaagaaGGCcacgGCCCg -3'
miRNA:   3'- -AGGUGcGGUUg---UCCGGGGG--------CCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 49625 0.67 0.368944
Target:  5'- --aACGCCAGguGGUCgaggaacgCCCGGUucACCCg -3'
miRNA:   3'- aggUGCGGUUguCCGG--------GGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 30998 0.66 0.385435
Target:  5'- gCCGgGUgAGCuGGUCCCCuccaGGaCGCCCa -3'
miRNA:   3'- aGGUgCGgUUGuCCGGGGG----CC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 2429 0.67 0.360882
Target:  5'- aCCugGUgCucCAGGUCCCCGcGUGCUCg -3'
miRNA:   3'- aGGugCG-GuuGUCCGGGGGC-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 66214 0.66 0.393861
Target:  5'- aCgACGCCAACAagggcuGCCCUCaGuGCAUCCg -3'
miRNA:   3'- aGgUGCGGUUGUc-----CGGGGG-C-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 30399 0.67 0.352943
Target:  5'- gCCGCGaCCAACGGGCgggCCgaacaCGGCgaggcguuGCCCg -3'
miRNA:   3'- aGGUGC-GGUUGUCCG---GGg----GCCG--------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 67300 0.67 0.345129
Target:  5'- aCCGCGCCGccaagcucguGCuGGCCgaacgcuggCCCGGgguGCCCa -3'
miRNA:   3'- aGGUGCGGU----------UGuCCGG---------GGGCCg--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 37009 0.66 0.411067
Target:  5'- gUCCugGCU----GGCCCCgCGGUugUCc -3'
miRNA:   3'- -AGGugCGGuuguCCGGGG-GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 50244 0.66 0.393861
Target:  5'- -aCGCGCCAcGCAcGGCgUUCGGCGCgCu -3'
miRNA:   3'- agGUGCGGU-UGU-CCGgGGGCCGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.