Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19265 | 5' | -62.5 | NC_004685.1 | + | 55105 | 0.66 | 0.432897 |
Target: 5'- -cGGUGUCGACgUCGCCugcgacGCCaauccagcagugGCGGCg -3' miRNA: 3'- aaCCGCGGCUGgAGUGGc-----UGG------------CGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 37375 | 0.66 | 0.432897 |
Target: 5'- cUGGaUGCCGAUCUgcaggGCCG-CUGCGGUc -3' miRNA: 3'- aACC-GCGGCUGGAg----UGGCuGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 18244 | 0.66 | 0.432897 |
Target: 5'- -gGGCGCacgGugCUCgcACCGauGCCGCaGCa -3' miRNA: 3'- aaCCGCGg--CugGAG--UGGC--UGGCGcCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 26031 | 0.66 | 0.397628 |
Target: 5'- -cGGUGCC-ACUUCACCG-CgGCaGCg -3' miRNA: 3'- aaCCGCGGcUGGAGUGGCuGgCGcCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 31750 | 0.66 | 0.432897 |
Target: 5'- -aGGUGCCGGCCagCuCCGACCacccgcccgcuGgGGUg -3' miRNA: 3'- aaCCGCGGCUGGa-GuGGCUGG-----------CgCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 12628 | 0.66 | 0.406272 |
Target: 5'- -cGGCGCguGCCa-GCCGugcaauaugcGCCGCGGCa -3' miRNA: 3'- aaCCGCGgcUGGagUGGC----------UGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 51091 | 0.66 | 0.432897 |
Target: 5'- -aGGaCGuuGAUggCACCGaugcuGCCGCGGUg -3' miRNA: 3'- aaCC-GCggCUGgaGUGGC-----UGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 26592 | 0.66 | 0.423908 |
Target: 5'- cUGcGCGCCGGCggCaagucggcgGCCGACgUGUGGCg -3' miRNA: 3'- aAC-CGCGGCUGgaG---------UGGCUG-GCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 7422 | 0.66 | 0.392499 |
Target: 5'- -aGcGCGCCGcgcguaucacuccccGCCccCGCCG-CCGUGGCu -3' miRNA: 3'- aaC-CGCGGC---------------UGGa-GUGGCuGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 39958 | 0.66 | 0.397628 |
Target: 5'- -cGGCGaCCGcACCUCGggccagaccCUGACCcUGGCg -3' miRNA: 3'- aaCCGC-GGC-UGGAGU---------GGCUGGcGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 33105 | 0.66 | 0.415032 |
Target: 5'- gUUGGUGCgCGACUg----GAUCGCGGCg -3' miRNA: 3'- -AACCGCG-GCUGGaguggCUGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 60896 | 0.66 | 0.415032 |
Target: 5'- -cGGCGCguAUCUCGauGGCCGUGGUg -3' miRNA: 3'- aaCCGCGgcUGGAGUggCUGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 63310 | 0.66 | 0.406272 |
Target: 5'- -gGGCaGUCGAUgUCACCcuGCCaGCGGUa -3' miRNA: 3'- aaCCG-CGGCUGgAGUGGc-UGG-CGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 51639 | 0.66 | 0.397628 |
Target: 5'- -cGGCGUCGaACgaCACCaccaugaACUGCGGCa -3' miRNA: 3'- aaCCGCGGC-UGgaGUGGc------UGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 46722 | 0.66 | 0.432897 |
Target: 5'- --aGCGUCGGgcuguaCUCACCGACCgGCaGCg -3' miRNA: 3'- aacCGCGGCUg-----GAGUGGCUGG-CGcCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 32294 | 0.66 | 0.389103 |
Target: 5'- gUGGCGCggCGACCgCAgCGGCCcugcagauCGGCa -3' miRNA: 3'- aACCGCG--GCUGGaGUgGCUGGc-------GCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 21208 | 0.66 | 0.389103 |
Target: 5'- -aGGCGaUCGACUUCuCCucGCCGuCGGCg -3' miRNA: 3'- aaCCGC-GGCUGGAGuGGc-UGGC-GCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 56141 | 0.66 | 0.397628 |
Target: 5'- -gGGuUGCgGAcCCUCAa-GACCGCGGUc -3' miRNA: 3'- aaCC-GCGgCU-GGAGUggCUGGCGCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 8314 | 0.66 | 0.415032 |
Target: 5'- gUGGCccccGCCGAgCggguUCACCGGCuaCGaCGGCg -3' miRNA: 3'- aACCG----CGGCUgG----AGUGGCUG--GC-GCCG- -5' |
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19265 | 5' | -62.5 | NC_004685.1 | + | 13784 | 0.66 | 0.397628 |
Target: 5'- aUGGCguGCUGGCCcaCACCGuCgGCGGg -3' miRNA: 3'- aACCG--CGGCUGGa-GUGGCuGgCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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