miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 5' -62.5 NC_004685.1 + 69241 1.08 0.00033
Target:  5'- uUUGGCGCCGACCUCACCGACCGCGGCu -3'
miRNA:   3'- -AACCGCGGCUGGAGUGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 46976 0.82 0.03001
Target:  5'- -cGGCGgUGGCCUCguccacGCCGACCGCGGUg -3'
miRNA:   3'- aaCCGCgGCUGGAG------UGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 48058 0.78 0.057759
Target:  5'- -gGGUGCCGACCcgcugcucgaagCACuCGAUCGCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGa-----------GUG-GCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 46082 0.77 0.068374
Target:  5'- gUGGUGCCaGAUC-CAUCGACCGCGGg -3'
miRNA:   3'- aACCGCGG-CUGGaGUGGCUGGCGCCg -5'
19265 5' -62.5 NC_004685.1 + 36871 0.77 0.070253
Target:  5'- -cGGCGuCCGGCaacaUCGUCGGCCGCGGCc -3'
miRNA:   3'- aaCCGC-GGCUGg---AGUGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 46762 0.76 0.091983
Target:  5'- -gGGUGCUGGCCgUCAUCGGCCGgGGa -3'
miRNA:   3'- aaCCGCGGCUGG-AGUGGCUGGCgCCg -5'
19265 5' -62.5 NC_004685.1 + 43879 0.75 0.097037
Target:  5'- -cGGCGCUGACCggccCACCG-CCGCugcccGGCg -3'
miRNA:   3'- aaCCGCGGCUGGa---GUGGCuGGCG-----CCG- -5'
19265 5' -62.5 NC_004685.1 + 19129 0.75 0.097037
Target:  5'- -cGGCGCCGGCgcccaUCGugucgcuguaucUCGGCCGCGGCu -3'
miRNA:   3'- aaCCGCGGCUGg----AGU------------GGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 30280 0.75 0.099661
Target:  5'- -cGGCGCCGACCUacgacaACCuGGCCucCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGAg-----UGG-CUGGc-GCCG- -5'
19265 5' -62.5 NC_004685.1 + 13514 0.75 0.107369
Target:  5'- --aGCGCCggGACCgccccgacgaggCACCGACCGCGGUc -3'
miRNA:   3'- aacCGCGG--CUGGa-----------GUGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 38321 0.75 0.107941
Target:  5'- -aGGCGCgGGCCUgGCCGAUcugCGCGaGCu -3'
miRNA:   3'- aaCCGCGgCUGGAgUGGCUG---GCGC-CG- -5'
19265 5' -62.5 NC_004685.1 + 11704 0.74 0.116248
Target:  5'- aUGGCgaacaaaaaaaucGCUGACCUCAUCgcaaaugGACUGCGGCa -3'
miRNA:   3'- aACCG-------------CGGCUGGAGUGG-------CUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 14489 0.74 0.116863
Target:  5'- cUGGU-CCGACCUgGgCGACCGUGGUg -3'
miRNA:   3'- aACCGcGGCUGGAgUgGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 40866 0.74 0.123189
Target:  5'- -cGGUGCUGGCgUCGCgGGCCGCgcgGGCc -3'
miRNA:   3'- aaCCGCGGCUGgAGUGgCUGGCG---CCG- -5'
19265 5' -62.5 NC_004685.1 + 18134 0.74 0.126469
Target:  5'- -gGGCGgUGGC---ACCGACCGCGGCg -3'
miRNA:   3'- aaCCGCgGCUGgagUGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 42475 0.73 0.133275
Target:  5'- gUGGUGCCGaACUUCGCCaGCCGuCGaGCg -3'
miRNA:   3'- aACCGCGGC-UGGAGUGGcUGGC-GC-CG- -5'
19265 5' -62.5 NC_004685.1 + 59874 0.73 0.140416
Target:  5'- gUGuGCGCgGgaccACCUCGCCGcggcgGCCGCGGUa -3'
miRNA:   3'- aAC-CGCGgC----UGGAGUGGC-----UGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 32541 0.73 0.144116
Target:  5'- -cGGCGUCGGCCcggccaCGCCGGagcagaUCGCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGa-----GUGGCU------GGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 39696 0.73 0.147906
Target:  5'- -aGGuCGCC-ACCggCGUCGACCGCGGCg -3'
miRNA:   3'- aaCC-GCGGcUGGa-GUGGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 28104 0.73 0.147906
Target:  5'- -aGcGCGCCGACCUcCACCGugggggcgcccACCGCaGCc -3'
miRNA:   3'- aaC-CGCGGCUGGA-GUGGC-----------UGGCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.