miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 5' -62.5 NC_004685.1 + 10075 0.71 0.200914
Target:  5'- -cGGuCGCCGAgaUUCGCCGGgCGCGGg -3'
miRNA:   3'- aaCC-GCGGCUg-GAGUGGCUgGCGCCg -5'
19265 5' -62.5 NC_004685.1 + 44715 0.72 0.163986
Target:  5'- -cGGcCGCUGuuCaUCACCGugUGCGGCa -3'
miRNA:   3'- aaCC-GCGGCugG-AGUGGCugGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 34169 0.72 0.163986
Target:  5'- -cGGCGUgguCGACCUgACCu-CCGUGGCa -3'
miRNA:   3'- aaCCGCG---GCUGGAgUGGcuGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 64935 0.72 0.168245
Target:  5'- -aGcGCGCCGACCacgagcgCGCCGACCaCGGa -3'
miRNA:   3'- aaC-CGCGGCUGGa------GUGGCUGGcGCCg -5'
19265 5' -62.5 NC_004685.1 + 50334 0.72 0.181621
Target:  5'- -cGGgGCCGACUUC----GCCGCGGCg -3'
miRNA:   3'- aaCCgCGGCUGGAGuggcUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 57025 0.72 0.181621
Target:  5'- -cGG-GCCGACCuUCACCuuGACCcgcccgGCGGCg -3'
miRNA:   3'- aaCCgCGGCUGG-AGUGG--CUGG------CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 30052 0.71 0.186285
Target:  5'- gUGGUGUCGGCaUCGCgGGCCGguuCGGCa -3'
miRNA:   3'- aACCGCGGCUGgAGUGgCUGGC---GCCG- -5'
19265 5' -62.5 NC_004685.1 + 30469 0.71 0.186285
Target:  5'- -cGGCGCCGAagcCGCCG-CCagGCGGCg -3'
miRNA:   3'- aaCCGCGGCUggaGUGGCuGG--CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 20345 0.71 0.19593
Target:  5'- -cGGCGgCGaACCgcuGCCcGCCGCGGCg -3'
miRNA:   3'- aaCCGCgGC-UGGag-UGGcUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 2569 0.72 0.163986
Target:  5'- gUUGGUGuuGuCCUCACCGaacgucGCCGCcagGGCg -3'
miRNA:   3'- -AACCGCggCuGGAGUGGC------UGGCG---CCG- -5'
19265 5' -62.5 NC_004685.1 + 19438 0.72 0.159824
Target:  5'- -aGcGCGCCGAa--CGCCGugCGUGGCg -3'
miRNA:   3'- aaC-CGCGGCUggaGUGGCugGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 1884 0.72 0.155758
Target:  5'- aUGGCGUcggucaggccgCGGCCgugcccgCugCGGCCGCGGUu -3'
miRNA:   3'- aACCGCG-----------GCUGGa------GugGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 46762 0.76 0.091983
Target:  5'- -gGGUGCUGGCCgUCAUCGGCCGgGGa -3'
miRNA:   3'- aaCCGCGGCUGG-AGUGGCUGGCgCCg -5'
19265 5' -62.5 NC_004685.1 + 19129 0.75 0.097037
Target:  5'- -cGGCGCCGGCgcccaUCGugucgcuguaucUCGGCCGCGGCu -3'
miRNA:   3'- aaCCGCGGCUGg----AGU------------GGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 30280 0.75 0.099661
Target:  5'- -cGGCGCCGACCUacgacaACCuGGCCucCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGAg-----UGG-CUGGc-GCCG- -5'
19265 5' -62.5 NC_004685.1 + 38321 0.75 0.107941
Target:  5'- -aGGCGCgGGCCUgGCCGAUcugCGCGaGCu -3'
miRNA:   3'- aaCCGCGgCUGGAgUGGCUG---GCGC-CG- -5'
19265 5' -62.5 NC_004685.1 + 11704 0.74 0.116248
Target:  5'- aUGGCgaacaaaaaaaucGCUGACCUCAUCgcaaaugGACUGCGGCa -3'
miRNA:   3'- aACCG-------------CGGCUGGAGUGG-------CUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 14489 0.74 0.116863
Target:  5'- cUGGU-CCGACCUgGgCGACCGUGGUg -3'
miRNA:   3'- aACCGcGGCUGGAgUgGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 32541 0.73 0.144116
Target:  5'- -cGGCGUCGGCCcggccaCGCCGGagcagaUCGCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGa-----GUGGCU------GGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 39262 0.73 0.151786
Target:  5'- -cGGCGUCGggcaacGCCUCGCCGugUuCGGCc -3'
miRNA:   3'- aaCCGCGGC------UGGAGUGGCugGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.