miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 5' -62.5 NC_004685.1 + 745 0.67 0.356225
Target:  5'- -aGGUGCCGACgcaGCCGGacagcgaacaUCGUGGCa -3'
miRNA:   3'- aaCCGCGGCUGgagUGGCU----------GGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 1140 0.67 0.340534
Target:  5'- -gGGCGCCcGCaUCggACUGGCCGgGGCc -3'
miRNA:   3'- aaCCGCGGcUGgAG--UGGCUGGCgCCG- -5'
19265 5' -62.5 NC_004685.1 + 1884 0.72 0.155758
Target:  5'- aUGGCGUcggucaggccgCGGCCgugcccgCugCGGCCGCGGUu -3'
miRNA:   3'- aACCGCG-----------GCUGGa------GugGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 2234 0.68 0.317948
Target:  5'- -gGGUGCCaGACCUgccugcCGcCCGGCCG-GGCu -3'
miRNA:   3'- aaCCGCGG-CUGGA------GU-GGCUGGCgCCG- -5'
19265 5' -62.5 NC_004685.1 + 2569 0.72 0.163986
Target:  5'- gUUGGUGuuGuCCUCACCGaacgucGCCGCcagGGCg -3'
miRNA:   3'- -AACCGCggCuGGAGUGGC------UGGCG---CCG- -5'
19265 5' -62.5 NC_004685.1 + 2887 0.7 0.221965
Target:  5'- -cGGCGCUGGCCaggaucgggCAcCCGGCCccagugccgguGCGGCg -3'
miRNA:   3'- aaCCGCGGCUGGa--------GU-GGCUGG-----------CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 3138 0.7 0.221965
Target:  5'- -gGGcCGCCGACUUggcCACCGACUGgcacaCGGCc -3'
miRNA:   3'- aaCC-GCGGCUGGA---GUGGCUGGC-----GCCG- -5'
19265 5' -62.5 NC_004685.1 + 3656 0.66 0.39677
Target:  5'- -cGGCGgUGACCUguaccgccaggacUACCGcgacGCCGaCGGCu -3'
miRNA:   3'- aaCCGCgGCUGGA-------------GUGGC----UGGC-GCCG- -5'
19265 5' -62.5 NC_004685.1 + 3752 0.67 0.340534
Target:  5'- -gGGCGaCGugUUCGcCCGGCCgaagcucgcgguGCGGCg -3'
miRNA:   3'- aaCCGCgGCugGAGU-GGCUGG------------CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 5132 0.66 0.389103
Target:  5'- -cGGCGCgcgaCGGCCguuucaaggugUUGCCGgaauaugaccGCCGCGGCu -3'
miRNA:   3'- aaCCGCG----GCUGG-----------AGUGGC----------UGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 5499 0.72 0.159824
Target:  5'- aUGGUGgCGGCCaUCGCCG-CCgaGCGGCc -3'
miRNA:   3'- aACCGCgGCUGG-AGUGGCuGG--CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 6565 0.69 0.250888
Target:  5'- -aGGUGCUGGCagcucggCACCGGCUG-GGCg -3'
miRNA:   3'- aaCCGCGGCUGga-----GUGGCUGGCgCCG- -5'
19265 5' -62.5 NC_004685.1 + 7175 0.7 0.233178
Target:  5'- -cGGUGuCCGAgCCgUCGggaggcCCGGCCGUGGCg -3'
miRNA:   3'- aaCCGC-GGCU-GG-AGU------GGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 7422 0.66 0.392499
Target:  5'- -aGcGCGCCGcgcguaucacuccccGCCccCGCCG-CCGUGGCu -3'
miRNA:   3'- aaC-CGCGGC---------------UGGa-GUGGCuGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 7505 0.71 0.186285
Target:  5'- -aGGCGCgGGCCgcaaGCCGuACC-CGGCg -3'
miRNA:   3'- aaCCGCGgCUGGag--UGGC-UGGcGCCG- -5'
19265 5' -62.5 NC_004685.1 + 7598 0.67 0.348316
Target:  5'- -cGGCaagcagGUCaACUUCGCCGAuCCGCGGUu -3'
miRNA:   3'- aaCCG------CGGcUGGAGUGGCU-GGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 7774 0.66 0.423908
Target:  5'- cUGGCGUCGGUCggugCGCgaCGGCCuGUGGCa -3'
miRNA:   3'- aACCGCGGCUGGa---GUG--GCUGG-CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 8314 0.66 0.415032
Target:  5'- gUGGCccccGCCGAgCggguUCACCGGCuaCGaCGGCg -3'
miRNA:   3'- aACCG----CGGCUgG----AGUGGCUG--GC-GCCG- -5'
19265 5' -62.5 NC_004685.1 + 8458 0.69 0.269692
Target:  5'- -cGGCGCgaagacgggugCGGCCgCGCUGGCCGaGGCu -3'
miRNA:   3'- aaCCGCG-----------GCUGGaGUGGCUGGCgCCG- -5'
19265 5' -62.5 NC_004685.1 + 9411 0.69 0.2633
Target:  5'- cUGGCGaaGACCaUCACCcaugcgGGCCGacCGGCg -3'
miRNA:   3'- aACCGCggCUGG-AGUGG------CUGGC--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.