miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 68356 1.08 0.000471
Target:  5'- aUCAGGGCUUCGCGGACGCACCGCCGAc -3'
miRNA:   3'- -AGUCCCGAAGCGCCUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 67870 0.66 0.492033
Target:  5'- aCAuGGGa-UCGCGG-CGCGCCGgCGu -3'
miRNA:   3'- aGU-CCCgaAGCGCCuGCGUGGCgGCu -5'
19267 3' -60.8 NC_004685.1 + 65368 0.66 0.50181
Target:  5'- cCuGcGGC-UCGCGGAgagGC-CCGCCGAg -3'
miRNA:   3'- aGuC-CCGaAGCGCCUg--CGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 63246 0.67 0.46704
Target:  5'- --cGGGCUguuCGGGCcaggugaugcccuugGCGCCGCCGGa -3'
miRNA:   3'- aguCCCGAagcGCCUG---------------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 62995 0.66 0.511671
Target:  5'- gUCAGGcccacgcggaaGCUgcccggCGUGGGCGCGgUGUCGAc -3'
miRNA:   3'- -AGUCC-----------CGAa-----GCGCCUGCGUgGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 62909 0.72 0.228083
Target:  5'- cCAGGGCgucaCGCaGACGCACCGgCu- -3'
miRNA:   3'- aGUCCCGaa--GCGcCUGCGUGGCgGcu -5'
19267 3' -60.8 NC_004685.1 + 58462 0.66 0.50181
Target:  5'- cUCGGuGGUgauUUCGCGG-C-CACCGUCGGc -3'
miRNA:   3'- -AGUC-CCG---AAGCGCCuGcGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 58348 0.73 0.186532
Target:  5'- gUCGGGGCgggUCGcCGGucGCGCACgGCCc- -3'
miRNA:   3'- -AGUCCCGa--AGC-GCC--UGCGUGgCGGcu -5'
19267 3' -60.8 NC_004685.1 + 57963 0.67 0.435379
Target:  5'- --cGGGCcgugCGCGGugucaGCGCACaGCCGGg -3'
miRNA:   3'- aguCCCGaa--GCGCC-----UGCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 55148 0.66 0.502792
Target:  5'- gUCGGGGCUcaugucgagcaccagCGCGG-CGCG-CGUCGGc -3'
miRNA:   3'- -AGUCCCGAa--------------GCGCCuGCGUgGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 54430 0.74 0.159888
Target:  5'- gCAGGuGCUcUGgGuuGACGCACCGCCGAu -3'
miRNA:   3'- aGUCC-CGAaGCgC--CUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 54042 0.66 0.521611
Target:  5'- gCGGGGaugcCGCGGGCGaugGCuCGCCGu -3'
miRNA:   3'- aGUCCCgaa-GCGCCUGCg--UG-GCGGCu -5'
19267 3' -60.8 NC_004685.1 + 53533 0.66 0.492033
Target:  5'- aUCGaGGCUUUGCGGucguggcuuuCGCugaCGCCGAc -3'
miRNA:   3'- -AGUcCCGAAGCGCCu---------GCGug-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 51152 0.7 0.283902
Target:  5'- --cGGGCUcgacuucgcggUUGCGGACGCGCa-CCGAa -3'
miRNA:   3'- aguCCCGA-----------AGCGCCUGCGUGgcGGCU- -5'
19267 3' -60.8 NC_004685.1 + 50415 0.66 0.521611
Target:  5'- cCGGGGagUagGuCGGuGCGCACCGCCa- -3'
miRNA:   3'- aGUCCCg-AagC-GCC-UGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 50333 0.7 0.311986
Target:  5'- cCGGGGCcgacUUCGcCGcGGCGCAUCuuGCCGAu -3'
miRNA:   3'- aGUCCCG----AAGC-GC-CUGCGUGG--CGGCU- -5'
19267 3' -60.8 NC_004685.1 + 48902 0.69 0.342129
Target:  5'- gCGGGGCU--GCc-GCGCAUCGCCGAg -3'
miRNA:   3'- aGUCCCGAagCGccUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 48415 0.68 0.382681
Target:  5'- cCAGGGCcucggucUCGauGGCGUACUGCUGGc -3'
miRNA:   3'- aGUCCCGa------AGCgcCUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 45753 0.66 0.511671
Target:  5'- cCGGGGCggCGCGuGuuCGCugCGCgGu -3'
miRNA:   3'- aGUCCCGaaGCGC-Cu-GCGugGCGgCu -5'
19267 3' -60.8 NC_004685.1 + 45298 0.68 0.374319
Target:  5'- gUCGGGGCcgcgguugUCGCGGAucaggauugcCGCcaacCCGCCGc -3'
miRNA:   3'- -AGUCCCGa-------AGCGCCU----------GCGu---GGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.