miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 5' -55.8 NC_004685.1 + 57342 0.66 0.75814
Target:  5'- uGCcgCGUCG-GCUGGUgAUCCagcuuggacACCACc -3'
miRNA:   3'- -CGuaGCGGCuUGACCGgUAGG---------UGGUG- -5'
19269 5' -55.8 NC_004685.1 + 13338 0.66 0.75814
Target:  5'- cGCGUgGCCGAagugcaggcACUGGa-AUUCGCCAg -3'
miRNA:   3'- -CGUAgCGGCU---------UGACCggUAGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 65943 0.66 0.75814
Target:  5'- uGCAUCGCUGAggggaucgccaACUGGCgGcCCAUUg- -3'
miRNA:   3'- -CGUAGCGGCU-----------UGACCGgUaGGUGGug -5'
19269 5' -55.8 NC_004685.1 + 4226 0.66 0.75814
Target:  5'- cGCAccCGgCGAcGCguucGGCCAgcuucUCCACCGCg -3'
miRNA:   3'- -CGUa-GCgGCU-UGa---CCGGU-----AGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 30717 0.66 0.75814
Target:  5'- cGCGcCGCCGuc---GCCgauGUCCACCGCg -3'
miRNA:   3'- -CGUaGCGGCuugacCGG---UAGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 32034 0.66 0.75814
Target:  5'- ----aGUCGAACgu-CCAUCCGCCGCc -3'
miRNA:   3'- cguagCGGCUUGaccGGUAGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 21776 0.66 0.747967
Target:  5'- cGCAaCGgUGAGCUGGUCgcagucggGUCCAUCAa -3'
miRNA:   3'- -CGUaGCgGCUUGACCGG--------UAGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 3134 0.66 0.747967
Target:  5'- cGCAgggcCGCCGAcUUGGCCA-CCGacuggcaCACg -3'
miRNA:   3'- -CGUa---GCGGCUuGACCGGUaGGUg------GUG- -5'
19269 5' -55.8 NC_004685.1 + 23474 0.66 0.744893
Target:  5'- gGCGuUCGCCGAgcgggucaaggaguACUGGCaggaCAUCGCg -3'
miRNA:   3'- -CGU-AGCGGCU--------------UGACCGguagGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 66755 0.66 0.73768
Target:  5'- uGCAUCcagaCCaaGAACUGGCCcgCCGCaccgGCa -3'
miRNA:   3'- -CGUAGc---GG--CUUGACCGGuaGGUGg---UG- -5'
19269 5' -55.8 NC_004685.1 + 32347 0.66 0.73561
Target:  5'- gGCAUCGaguacggcgcaGAGgUGGCCGgcaUCACCGCg -3'
miRNA:   3'- -CGUAGCgg---------CUUgACCGGUa--GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 29056 0.66 0.72729
Target:  5'- cGCAgaugcUCGCCGAACUucaccaGGUCGUagauggugCCGCCGa -3'
miRNA:   3'- -CGU-----AGCGGCUUGA------CCGGUA--------GGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 12430 0.66 0.72729
Target:  5'- cCAUCGCCGAGaaGGCgGcagcCCugCGCc -3'
miRNA:   3'- cGUAGCGGCUUgaCCGgUa---GGugGUG- -5'
19269 5' -55.8 NC_004685.1 + 37217 0.66 0.72729
Target:  5'- gGCAgCGCCGg---GGCCGcgccgaugauUCCACCAg -3'
miRNA:   3'- -CGUaGCGGCuugaCCGGU----------AGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 55342 0.66 0.72729
Target:  5'- gGCA-CGaCGggUUGGCguuCAUCCACUGCu -3'
miRNA:   3'- -CGUaGCgGCuuGACCG---GUAGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 13959 0.66 0.716808
Target:  5'- gGCGUacgccaaGCCGAGCgggucGcGCCGUUCAuCCGCa -3'
miRNA:   3'- -CGUAg------CGGCUUGa----C-CGGUAGGU-GGUG- -5'
19269 5' -55.8 NC_004685.1 + 29007 0.66 0.716808
Target:  5'- cGCGuUCGUUcAGCUGGCCAacggugcggUCGCCGCg -3'
miRNA:   3'- -CGU-AGCGGcUUGACCGGUa--------GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 64185 0.66 0.716808
Target:  5'- cGC-UCGgCGGcgaUGGCCG-CCACCAUg -3'
miRNA:   3'- -CGuAGCgGCUug-ACCGGUaGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 11553 0.66 0.716808
Target:  5'- uGCGcugCGCUGGGCaucgugucGGCUGUCCACgGCa -3'
miRNA:   3'- -CGUa--GCGGCUUGa-------CCGGUAGGUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 1276 0.66 0.716808
Target:  5'- gGCAUCGCC-AGCUcGGCCAcggCAUCAg -3'
miRNA:   3'- -CGUAGCGGcUUGA-CCGGUag-GUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.