miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 3' -65.5 NC_004685.1 + 25991 0.66 0.322616
Target:  5'- cCAGcCGGGCAgGGUgCGCaGCCggucgccgagcgcgGGCCGg -3'
miRNA:   3'- -GUC-GCCCGUgCCG-GCGcCGGa-------------CUGGC- -5'
19270 3' -65.5 NC_004685.1 + 37317 0.66 0.319719
Target:  5'- gCAGUGGGCGCagGGCCuCGGU---GCCGa -3'
miRNA:   3'- -GUCGCCCGUG--CCGGcGCCGgacUGGC- -5'
19270 3' -65.5 NC_004685.1 + 67016 0.66 0.319719
Target:  5'- aCAGCGGGU---GCUGCGGUCgcgacGACCc -3'
miRNA:   3'- -GUCGCCCGugcCGGCGCCGGa----CUGGc -5'
19270 3' -65.5 NC_004685.1 + 27122 0.66 0.319719
Target:  5'- -cGUGGGCugAUGGCCGgcucUGGCgUGugCGa -3'
miRNA:   3'- guCGCCCG--UGCCGGC----GCCGgACugGC- -5'
19270 3' -65.5 NC_004685.1 + 40550 0.66 0.312564
Target:  5'- gCAGCGGaGCuggagUGGaCCGCGGUgUcGACCa -3'
miRNA:   3'- -GUCGCC-CGu----GCC-GGCGCCGgA-CUGGc -5'
19270 3' -65.5 NC_004685.1 + 46386 0.66 0.312564
Target:  5'- -cGCGguucucGGCGUGGCCGCGGgCgUGAUCGc -3'
miRNA:   3'- guCGC------CCGUGCCGGCGCC-GgACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 49657 0.66 0.312564
Target:  5'- cCGGCGGGUcuugguguaGCGGUC-CaGGuCCUGAUCGa -3'
miRNA:   3'- -GUCGCCCG---------UGCCGGcG-CC-GGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 8692 0.66 0.312564
Target:  5'- -cGCcGGCACGGCCugcGUGGUC-GACCc -3'
miRNA:   3'- guCGcCCGUGCCGG---CGCCGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 66259 0.66 0.312564
Target:  5'- gCGGCccgugcaaucaGGGCAuCGGCCGCuGGUC--GCCGg -3'
miRNA:   3'- -GUCG-----------CCCGU-GCCGGCG-CCGGacUGGC- -5'
19270 3' -65.5 NC_004685.1 + 36559 0.66 0.312564
Target:  5'- cCGGCGcGCcCGGCgaCGCGGguccgaucaaCCUGGCCGa -3'
miRNA:   3'- -GUCGCcCGuGCCG--GCGCC----------GGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 66521 0.66 0.305531
Target:  5'- uGGCGGccacaGCGCuGGCCGUGuGCCagucggUGGCCa -3'
miRNA:   3'- gUCGCC-----CGUG-CCGGCGC-CGG------ACUGGc -5'
19270 3' -65.5 NC_004685.1 + 38427 0.66 0.305531
Target:  5'- gUAGCccaucuGCGCGGCCGCGauGCC-GACCa -3'
miRNA:   3'- -GUCGcc----CGUGCCGGCGC--CGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 23288 0.66 0.305531
Target:  5'- aCGGCGauCACGcCCGCGGCCacGCCGa -3'
miRNA:   3'- -GUCGCccGUGCcGGCGCCGGacUGGC- -5'
19270 3' -65.5 NC_004685.1 + 44323 0.66 0.304139
Target:  5'- gGGCGGGCGCacccuggucgacGCgGUGGCCgcGAUCGg -3'
miRNA:   3'- gUCGCCCGUGc-----------CGgCGCCGGa-CUGGC- -5'
19270 3' -65.5 NC_004685.1 + 40864 0.66 0.298619
Target:  5'- -cGCGGuGCugGcGUCGCGGgCCgcgcgGGCCu -3'
miRNA:   3'- guCGCC-CGugC-CGGCGCC-GGa----CUGGc -5'
19270 3' -65.5 NC_004685.1 + 58132 0.66 0.298619
Target:  5'- uGGUaGGCGCGGuuGcCGGCUUGAUg- -3'
miRNA:   3'- gUCGcCCGUGCCggC-GCCGGACUGgc -5'
19270 3' -65.5 NC_004685.1 + 45198 0.66 0.298619
Target:  5'- cCGGCGaccuGUAC-GCCGCGGCCgaGCCGg -3'
miRNA:   3'- -GUCGCc---CGUGcCGGCGCCGGacUGGC- -5'
19270 3' -65.5 NC_004685.1 + 195 0.66 0.294531
Target:  5'- -cGCGGGUuucggcgcgacgaguGCGcGCUgguguGCGGCUUGACUGg -3'
miRNA:   3'- guCGCCCG---------------UGC-CGG-----CGCCGGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 14931 0.66 0.29183
Target:  5'- aGGCGGGCgacGCGGCgauggcggUGCGGCgUGAguUCGu -3'
miRNA:   3'- gUCGCCCG---UGCCG--------GCGCCGgACU--GGC- -5'
19270 3' -65.5 NC_004685.1 + 17076 0.66 0.29183
Target:  5'- gAGCuGGaGCGCuGGCCcauCGGCCUGGuCCa -3'
miRNA:   3'- gUCG-CC-CGUG-CCGGc--GCCGGACU-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.