miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 3' -62 NC_004685.1 + 13491 0.66 0.437514
Target:  5'- ---gUGGCCUaugGGCCUgacauUGCAGCGCc -3'
miRNA:   3'- aggaACCGGGg--CCGGAac---GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 745 0.66 0.428389
Target:  5'- uUCUgaagcgUGGCCUgcuCGGUCUUG-GCGGCaGCa -3'
miRNA:   3'- -AGGa-----ACCGGG---GCCGGAACgCGUCG-CG- -5'
19282 3' -62 NC_004685.1 + 44893 0.66 0.428389
Target:  5'- aCCgcgcGGaCCCCGGCUcaUGCaccgcCAGCGCa -3'
miRNA:   3'- aGGaa--CC-GGGGCCGGa-ACGc----GUCGCG- -5'
19282 3' -62 NC_004685.1 + 18656 0.66 0.425674
Target:  5'- ----cGGCCCCGGUCcUGaCGCAGaucagggcuggggcCGCa -3'
miRNA:   3'- aggaaCCGGGGCCGGaAC-GCGUC--------------GCG- -5'
19282 3' -62 NC_004685.1 + 24465 0.66 0.419378
Target:  5'- gUCCUgcUGcGaaucaCCCGGCUcgGcCGCGGCGUa -3'
miRNA:   3'- -AGGA--AC-Cg----GGGCCGGaaC-GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 25422 0.66 0.419378
Target:  5'- uUCCUUGGUguagucgggcgCCaagaucgGGCCgggcUGCuGCGGCGCu -3'
miRNA:   3'- -AGGAACCG-----------GGg------CCGGa---ACG-CGUCGCG- -5'
19282 3' -62 NC_004685.1 + 57948 0.66 0.410482
Target:  5'- cUCCaucgGGCacagCgGGCCgUGCGCGGUGUc -3'
miRNA:   3'- -AGGaa--CCGg---GgCCGGaACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 19188 0.66 0.410482
Target:  5'- cUCCggGGCUgCCGGCCgguucGUGuCAGCGa -3'
miRNA:   3'- -AGGaaCCGG-GGCCGGaa---CGC-GUCGCg -5'
19282 3' -62 NC_004685.1 + 37500 0.66 0.410482
Target:  5'- cCCgcccaGCCCUGGCgagGUGUGGCGCg -3'
miRNA:   3'- aGGaac--CGGGGCCGgaaCGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 32534 0.66 0.393047
Target:  5'- aCCUUcccGGCgucggCCCGGCCacGCcggagcagaucGCGGCGCa -3'
miRNA:   3'- aGGAA---CCG-----GGGCCGGaaCG-----------CGUCGCG- -5'
19282 3' -62 NC_004685.1 + 36978 0.66 0.393047
Target:  5'- aUCgcuGCCCCGGgaUUGCGUAGCGa -3'
miRNA:   3'- aGGaacCGGGGCCggAACGCGUCGCg -5'
19282 3' -62 NC_004685.1 + 55610 0.67 0.384512
Target:  5'- gCCUgggauGCCUCGGCCgaagccGCGCucgcgGGCGCc -3'
miRNA:   3'- aGGAac---CGGGGCCGGaa----CGCG-----UCGCG- -5'
19282 3' -62 NC_004685.1 + 41388 0.67 0.384512
Target:  5'- gUCCUUGaucucGCCCUGGU---GCGUggAGCGCa -3'
miRNA:   3'- -AGGAAC-----CGGGGCCGgaaCGCG--UCGCG- -5'
19282 3' -62 NC_004685.1 + 11070 0.67 0.359654
Target:  5'- gUCggUGGCCgCGGCgacacUGCGCAGCa- -3'
miRNA:   3'- -AGgaACCGGgGCCGga---ACGCGUCGcg -5'
19282 3' -62 NC_004685.1 + 68325 0.67 0.359654
Target:  5'- gUCCgagugugcgUGcGCCCCGGguCCgugUGUGCGuGCGCc -3'
miRNA:   3'- -AGGa--------AC-CGGGGCC--GGa--ACGCGU-CGCG- -5'
19282 3' -62 NC_004685.1 + 13665 0.67 0.359654
Target:  5'- uUCCgacaucgccgGGUCguaCUGGCCgcggGUGCGGCGCa -3'
miRNA:   3'- -AGGaa--------CCGG---GGCCGGaa--CGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 12600 0.67 0.351621
Target:  5'- aCCUgaaguauGUUCgGGCCaaccUGCGCGGCGCg -3'
miRNA:   3'- aGGAac-----CGGGgCCGGa---ACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 61205 0.67 0.343717
Target:  5'- aCCggcgcucaGCCUCGGCCa-GCGCGGcCGCa -3'
miRNA:   3'- aGGaac-----CGGGGCCGGaaCGCGUC-GCG- -5'
19282 3' -62 NC_004685.1 + 39549 0.67 0.343717
Target:  5'- gCCggGGCugCCgGGCCgaGUGCGGcCGCg -3'
miRNA:   3'- aGGaaCCG--GGgCCGGaaCGCGUC-GCG- -5'
19282 3' -62 NC_004685.1 + 58316 0.67 0.340591
Target:  5'- aCCUUGGUcggCCCGGCCggcacagccucgGUGuCGGgGCg -3'
miRNA:   3'- aGGAACCG---GGGCCGGaa----------CGC-GUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.