miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 5' -53.9 NC_004685.1 + 28815 0.66 0.859969
Target:  5'- aGGC-CCGCGCGgcccGCGACgccagCACc -3'
miRNA:   3'- aCCGuGGCGCGUaca-UGCUGaa---GUGc -5'
19282 5' -53.9 NC_004685.1 + 36373 0.66 0.859969
Target:  5'- cGGuCGCCGCGCccG-ACGGCggcCugGg -3'
miRNA:   3'- aCC-GUGGCGCGuaCaUGCUGaa-GugC- -5'
19282 5' -53.9 NC_004685.1 + 18929 0.66 0.859969
Target:  5'- aUGGCcgacaugaugGCCGCGC-UGUGCcuGGCgcUCGCGc -3'
miRNA:   3'- -ACCG----------UGGCGCGuACAUG--CUGa-AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 37822 0.66 0.859969
Target:  5'- cGGCACCuGCGgcUGcUGCGACUgcuGCGg -3'
miRNA:   3'- aCCGUGG-CGCguAC-AUGCUGAag-UGC- -5'
19282 5' -53.9 NC_004685.1 + 24920 0.66 0.859969
Target:  5'- aGGC-CCGCGCGgUGU-CGGCgUCGgGu -3'
miRNA:   3'- aCCGuGGCGCGU-ACAuGCUGaAGUgC- -5'
19282 5' -53.9 NC_004685.1 + 2186 0.66 0.859969
Target:  5'- aGcGCACCGCGCAccgcgaGUGCGAgCUggccgagCugGa -3'
miRNA:   3'- aC-CGUGGCGCGUa-----CAUGCU-GAa------GugC- -5'
19282 5' -53.9 NC_004685.1 + 23904 0.66 0.857504
Target:  5'- uUGcGCACCGCcucguugcgcgccaGCGUGUcgaGCaGACUcaUCGCGg -3'
miRNA:   3'- -AC-CGUGGCG--------------CGUACA---UG-CUGA--AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 18521 0.66 0.851674
Target:  5'- aGGCGCUGCGCG-GUAuCGACa----- -3'
miRNA:   3'- aCCGUGGCGCGUaCAU-GCUGaagugc -5'
19282 5' -53.9 NC_004685.1 + 47378 0.66 0.851674
Target:  5'- aGGUGCUGCGUacgcucgugcggGUGUAUGACgcgaACGa -3'
miRNA:   3'- aCCGUGGCGCG------------UACAUGCUGaag-UGC- -5'
19282 5' -53.9 NC_004685.1 + 43149 0.66 0.851674
Target:  5'- cUGGCGaCGCGCAccgaGUGCGGCg--GCGa -3'
miRNA:   3'- -ACCGUgGCGCGUa---CAUGCUGaagUGC- -5'
19282 5' -53.9 NC_004685.1 + 43670 0.66 0.851674
Target:  5'- gUGGCACCGCGaacGgauCGGCUgggggUACGc -3'
miRNA:   3'- -ACCGUGGCGCguaCau-GCUGAa----GUGC- -5'
19282 5' -53.9 NC_004685.1 + 27339 0.66 0.843151
Target:  5'- gUGGCACgGCGaagcauGUGUACGGCaUCuucCGu -3'
miRNA:   3'- -ACCGUGgCGCg-----UACAUGCUGaAGu--GC- -5'
19282 5' -53.9 NC_004685.1 + 36173 0.66 0.843151
Target:  5'- gUGGCGaacCCGuCGCGcugggccaccacUGUGCGGcCUUCACc -3'
miRNA:   3'- -ACCGU---GGC-GCGU------------ACAUGCU-GAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 45834 0.66 0.843151
Target:  5'- cGGCACCGU-CGUGgcCGACcggcUCACc -3'
miRNA:   3'- aCCGUGGCGcGUACauGCUGa---AGUGc -5'
19282 5' -53.9 NC_004685.1 + 33173 0.66 0.834411
Target:  5'- gUGGCACCggccggugguggGCGCcgGUGCGGUggaCGCGc -3'
miRNA:   3'- -ACCGUGG------------CGCGuaCAUGCUGaa-GUGC- -5'
19282 5' -53.9 NC_004685.1 + 64189 0.66 0.834411
Target:  5'- cGGUGCCGCG-GUGU-CGAgUagUCGCGg -3'
miRNA:   3'- aCCGUGGCGCgUACAuGCUgA--AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 34660 0.66 0.82546
Target:  5'- cUGGCAgCGCGCcg--GCGAgUUCgGCGa -3'
miRNA:   3'- -ACCGUgGCGCGuacaUGCUgAAG-UGC- -5'
19282 5' -53.9 NC_004685.1 + 18028 0.66 0.82546
Target:  5'- cGGCcaacaugcuGCCGCGCGcgGUGaugcagGGCUUCACc -3'
miRNA:   3'- aCCG---------UGGCGCGUa-CAUg-----CUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 2904 0.66 0.819993
Target:  5'- gGGCACCcggccccaGUGCcgGUGCGGCgggccaguucuuggUCugGa -3'
miRNA:   3'- aCCGUGG--------CGCGuaCAUGCUGa-------------AGugC- -5'
19282 5' -53.9 NC_004685.1 + 55669 0.66 0.816309
Target:  5'- -cGCGCUGCGaggGUGCGACgcuggccggCACGg -3'
miRNA:   3'- acCGUGGCGCguaCAUGCUGaa-------GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.