miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 5' -60.1 NC_004685.1 + 17437 0.66 0.552514
Target:  5'- gCGAUgaagGCGGCCCugCCGGUGGUcaucgccGGuGCg -3'
miRNA:   3'- -GCUGa---CGCCGGGuaGGCCAUCG-------CC-UG- -5'
19283 5' -60.1 NC_004685.1 + 5554 0.66 0.543313
Target:  5'- -cGCUGCGcGCCgAUCaGGUGGCGaGCc -3'
miRNA:   3'- gcUGACGC-CGGgUAGgCCAUCGCcUG- -5'
19283 5' -60.1 NC_004685.1 + 5918 0.66 0.543313
Target:  5'- ----aGCGGCUgAUCCGuG-AGUGGACg -3'
miRNA:   3'- gcugaCGCCGGgUAGGC-CaUCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 44681 0.66 0.542294
Target:  5'- gGGCUaccuggaGCGGCCCc-CCGGgc-CGGACa -3'
miRNA:   3'- gCUGA-------CGCCGGGuaGGCCaucGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 26617 0.66 0.53924
Target:  5'- cCGACgUGUGGCgCAUCUGGggcagccaggccGCGGAg -3'
miRNA:   3'- -GCUG-ACGCCGgGUAGGCCau----------CGCCUg -5'
19283 5' -60.1 NC_004685.1 + 18473 0.66 0.53315
Target:  5'- -aGCUGgaUGGCCCG-CUGGUGguGCGGAUg -3'
miRNA:   3'- gcUGAC--GCCGGGUaGGCCAU--CGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 6503 0.66 0.53315
Target:  5'- aGAUUGUGcacccGCCCGagCCGGUGGUcGACa -3'
miRNA:   3'- gCUGACGC-----CGGGUa-GGCCAUCGcCUG- -5'
19283 5' -60.1 NC_004685.1 + 35426 0.66 0.513037
Target:  5'- uCGACUcgGCGGUgCGUCaGGUGGUcGACg -3'
miRNA:   3'- -GCUGA--CGCCGgGUAGgCCAUCGcCUG- -5'
19283 5' -60.1 NC_004685.1 + 11774 0.67 0.493242
Target:  5'- nCGGCggGCcGCCCAcUCCGGUGGUGa-- -3'
miRNA:   3'- -GCUGa-CGcCGGGU-AGGCCAUCGCcug -5'
19283 5' -60.1 NC_004685.1 + 57016 0.67 0.483476
Target:  5'- --uCUGCGGCCCGcaccUCCGacAGCGGcCg -3'
miRNA:   3'- gcuGACGCCGGGU----AGGCcaUCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 58400 0.67 0.473804
Target:  5'- gCGAUcuUGUcGCCCAucgUCCGGUucAGCGGGa -3'
miRNA:   3'- -GCUG--ACGcCGGGU---AGGCCA--UCGCCUg -5'
19283 5' -60.1 NC_004685.1 + 62940 0.67 0.46423
Target:  5'- gCGACaUGCccGGCCgAUCCGGcGGgGuGACg -3'
miRNA:   3'- -GCUG-ACG--CCGGgUAGGCCaUCgC-CUG- -5'
19283 5' -60.1 NC_004685.1 + 23155 0.67 0.449126
Target:  5'- cCGACUGCuGGCCCAgugcuacguccccaUCGGcGGCGG-Cu -3'
miRNA:   3'- -GCUGACG-CCGGGUa-------------GGCCaUCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 14716 0.67 0.449126
Target:  5'- aCGGC-GCGGCCCGUgcgcuggagccggcaCUGGUcgaAGCGGcCa -3'
miRNA:   3'- -GCUGaCGCCGGGUA---------------GGCCA---UCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 39221 0.68 0.436135
Target:  5'- uGGCgGCGGCuUCGgcgCCGGcUGGgGGACg -3'
miRNA:   3'- gCUGaCGCCG-GGUa--GGCC-AUCgCCUG- -5'
19283 5' -60.1 NC_004685.1 + 2427 0.68 0.42699
Target:  5'- aCGAC-GCGGCCg--CCGGUGGCcuguucGACg -3'
miRNA:   3'- -GCUGaCGCCGGguaGGCCAUCGc-----CUG- -5'
19283 5' -60.1 NC_004685.1 + 94 0.68 0.417959
Target:  5'- gGAC-GCGcGCCCGUUggccgcuaggCGGUAGCGG-Cg -3'
miRNA:   3'- gCUGaCGC-CGGGUAG----------GCCAUCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 37270 0.68 0.409045
Target:  5'- gGACUGUucgugccgGGUCCGUUCGGgucGGCGGcCg -3'
miRNA:   3'- gCUGACG--------CCGGGUAGGCCa--UCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 32277 0.68 0.391579
Target:  5'- uGGC-GCGGgCgGUCCuGGUGGCGcGGCg -3'
miRNA:   3'- gCUGaCGCCgGgUAGG-CCAUCGC-CUG- -5'
19283 5' -60.1 NC_004685.1 + 2904 0.69 0.366308
Target:  5'- gGGCaccCGGCCCcagugCCGGUgcGGCGGGCc -3'
miRNA:   3'- gCUGac-GCCGGGua---GGCCA--UCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.