miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19291 3' -63.1 NC_004685.1 + 69572 0.66 0.390961
Target:  5'- cCCCaagAGCGCAGCaaCGGCGUCcACGCc -3'
miRNA:   3'- cGGG---UCGCGUCGc-GUCGCGGcUGCGu -5'
19291 3' -63.1 NC_004685.1 + 59714 0.66 0.390961
Target:  5'- gGUCCucgGGUGCGGCGUAGUccacGUCGcCGCGg -3'
miRNA:   3'- -CGGG---UCGCGUCGCGUCG----CGGCuGCGU- -5'
19291 3' -63.1 NC_004685.1 + 69483 0.66 0.390961
Target:  5'- -aCCAGCGCGcacuCGUcGCGCCGAaaccCGCGc -3'
miRNA:   3'- cgGGUCGCGUc---GCGuCGCGGCU----GCGU- -5'
19291 3' -63.1 NC_004685.1 + 10378 0.66 0.390961
Target:  5'- aCCguGCGCAGCGCGuCGCCaACa-- -3'
miRNA:   3'- cGGguCGCGUCGCGUcGCGGcUGcgu -5'
19291 3' -63.1 NC_004685.1 + 51721 0.66 0.390961
Target:  5'- gGCCC-GCgauccacucgGguGCGCGGuUGCCGAUGUg -3'
miRNA:   3'- -CGGGuCG----------CguCGCGUC-GCGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 61856 0.66 0.390961
Target:  5'- aCCUcGCGCuGCGCAGCGauGACaCAu -3'
miRNA:   3'- cGGGuCGCGuCGCGUCGCggCUGcGU- -5'
19291 3' -63.1 NC_004685.1 + 11971 0.66 0.390961
Target:  5'- gGUCCGGCgGC-GUGCucgaaGGCGCuCGACGUg -3'
miRNA:   3'- -CGGGUCG-CGuCGCG-----UCGCG-GCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 70 0.66 0.390961
Target:  5'- -gCCGGgGCgGGCGC-GCGCCcgugugGACGCGc -3'
miRNA:   3'- cgGGUCgCG-UCGCGuCGCGG------CUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 60401 0.66 0.390961
Target:  5'- gGCUCGG-GUGGCccuGCAGCuGuuGACGCAu -3'
miRNA:   3'- -CGGGUCgCGUCG---CGUCG-CggCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 30272 0.66 0.385875
Target:  5'- uCCUGGCGCGGCGcCgaccuacgacaaccuGGCcuCCGGCGCGg -3'
miRNA:   3'- cGGGUCGCGUCGC-G---------------UCGc-GGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 16218 0.66 0.382508
Target:  5'- uGCCCaAGCugugcgaagacuGCGGCgagGUAGUGCCGAcCGCc -3'
miRNA:   3'- -CGGG-UCG------------CGUCG---CGUCGCGGCU-GCGu -5'
19291 3' -63.1 NC_004685.1 + 18009 0.66 0.382508
Target:  5'- cGCaUCGGCGacgaaGGCGCGGCcaacaugcuGCCGcGCGCGg -3'
miRNA:   3'- -CG-GGUCGCg----UCGCGUCG---------CGGC-UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 28087 0.66 0.374177
Target:  5'- cGCCgAGCuGCAGCagGCGuuCGCCG-CGCAg -3'
miRNA:   3'- -CGGgUCG-CGUCG--CGUc-GCGGCuGCGU- -5'
19291 3' -63.1 NC_004685.1 + 10089 0.66 0.374177
Target:  5'- cGCCgGGCGCgGGUGCagucgaugAGCGgCGACGa- -3'
miRNA:   3'- -CGGgUCGCG-UCGCG--------UCGCgGCUGCgu -5'
19291 3' -63.1 NC_004685.1 + 2171 0.66 0.374177
Target:  5'- aGUCUgcgGGCGCAGUGUgucgauGGCGCgGACGa- -3'
miRNA:   3'- -CGGG---UCGCGUCGCG------UCGCGgCUGCgu -5'
19291 3' -63.1 NC_004685.1 + 5461 0.66 0.374177
Target:  5'- gGgCCGGCGCgggucauccGGCGCGGUucgugGCCGACa-- -3'
miRNA:   3'- -CgGGUCGCG---------UCGCGUCG-----CGGCUGcgu -5'
19291 3' -63.1 NC_004685.1 + 65213 0.66 0.374177
Target:  5'- -gCCAGCGCAuGCacccGCAaCGCUGACGUu -3'
miRNA:   3'- cgGGUCGCGU-CG----CGUcGCGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 2749 0.66 0.373351
Target:  5'- uGgCCAGCGUcucgucgGGCaCGGUGCCGcgGCGCGc -3'
miRNA:   3'- -CgGGUCGCG-------UCGcGUCGCGGC--UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 17200 0.66 0.371702
Target:  5'- gGCaCAGCuacgagggcugcgaGCAGCacgaGCAGCGCgCGugGCGg -3'
miRNA:   3'- -CGgGUCG--------------CGUCG----CGUCGCG-GCugCGU- -5'
19291 3' -63.1 NC_004685.1 + 32538 0.66 0.36597
Target:  5'- uCCCGGCGuCGGCcCGGCcacGCCGGaGCAg -3'
miRNA:   3'- cGGGUCGC-GUCGcGUCG---CGGCUgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.