miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 5' -56.4 NC_004685.1 + 22399 0.66 0.741736
Target:  5'- gAGGaCGAGGCcgcGGACuGGCg-GUUGGCg -3'
miRNA:   3'- -UCCaGCUUCGa--CCUG-CUGagCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 40459 0.66 0.741736
Target:  5'- ---gCGggGCUGGACGcCgaacCUGGCg -3'
miRNA:   3'- uccaGCuuCGACCUGCuGagc-GACCG- -5'
19295 5' -56.4 NC_004685.1 + 19845 0.66 0.741736
Target:  5'- ---aUGAcGgUGGGCGGCUCGUcGGCa -3'
miRNA:   3'- uccaGCUuCgACCUGCUGAGCGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 44359 0.66 0.731488
Target:  5'- cGGggaGAAGCUGGGCa--UCcCUGGCu -3'
miRNA:   3'- uCCag-CUUCGACCUGcugAGcGACCG- -5'
19295 5' -56.4 NC_004685.1 + 18908 0.66 0.730458
Target:  5'- uGGcCGAcgcgcgccgcgacGGCgcGGGCGAgaUGCUGGCg -3'
miRNA:   3'- uCCaGCU-------------UCGa-CCUGCUgaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 2213 0.66 0.721145
Target:  5'- uGGcCGAgcuggAGCUGGAagaCGACgacgaGCUGGUc -3'
miRNA:   3'- uCCaGCU-----UCGACCU---GCUGag---CGACCG- -5'
19295 5' -56.4 NC_004685.1 + 53826 0.66 0.710718
Target:  5'- gGGGUCGggGUUGGACauccaggccacuGAgUCGaugaugcGGCc -3'
miRNA:   3'- -UCCAGCuuCGACCUG------------CUgAGCga-----CCG- -5'
19295 5' -56.4 NC_004685.1 + 4013 0.67 0.688596
Target:  5'- -aGUCGAcgGGCUGGccuucgcGCGGCUCGgguucgGGCa -3'
miRNA:   3'- ucCAGCU--UCGACC-------UGCUGAGCga----CCG- -5'
19295 5' -56.4 NC_004685.1 + 20416 0.67 0.679039
Target:  5'- ----aGAucGCagGGACGAuCUCGCUGGCc -3'
miRNA:   3'- uccagCUu-CGa-CCUGCU-GAGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 55329 0.67 0.679039
Target:  5'- gGGGUgCGguGCgGGcACGACggGUUGGCg -3'
miRNA:   3'- -UCCA-GCuuCGaCC-UGCUGagCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 197 0.67 0.668382
Target:  5'- cGGGUuucggcgcgaCGAGugcgcGCUGGuguGCGGCUUGaCUGGCa -3'
miRNA:   3'- -UCCA----------GCUU-----CGACC---UGCUGAGC-GACCG- -5'
19295 5' -56.4 NC_004685.1 + 67863 0.67 0.668382
Target:  5'- gAGGUCGAca-UGGGaucgcggcgcgcCGGCgucgCGCUGGCc -3'
miRNA:   3'- -UCCAGCUucgACCU------------GCUGa---GCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 10652 0.67 0.668382
Target:  5'- aGGGUgaGggGCUGGAucgucgcguCGugUgGCggGGCg -3'
miRNA:   3'- -UCCAg-CuuCGACCU---------GCugAgCGa-CCG- -5'
19295 5' -56.4 NC_004685.1 + 5528 0.67 0.657691
Target:  5'- gGGGUUcuacGAGCUGGucauCGGCaCGCUGcGCg -3'
miRNA:   3'- -UCCAGc---UUCGACCu---GCUGaGCGAC-CG- -5'
19295 5' -56.4 NC_004685.1 + 29406 0.67 0.646978
Target:  5'- cGaGUUGGAGUaGGACGAagaCUCGCccGGCu -3'
miRNA:   3'- uC-CAGCUUCGaCCUGCU---GAGCGa-CCG- -5'
19295 5' -56.4 NC_004685.1 + 23607 0.68 0.625523
Target:  5'- cAGGUCccgGGuuuGCUGGACG-CUCcgGCaUGGCa -3'
miRNA:   3'- -UCCAG---CUu--CGACCUGCuGAG--CG-ACCG- -5'
19295 5' -56.4 NC_004685.1 + 57136 0.68 0.60409
Target:  5'- uGGUCGgcGgUGGugGAC-CGCacGGUg -3'
miRNA:   3'- uCCAGCuuCgACCugCUGaGCGa-CCG- -5'
19295 5' -56.4 NC_004685.1 + 23244 0.68 0.593404
Target:  5'- cGG-CGAAGCUGGAUGGCcugaucgaGCcGGUg -3'
miRNA:   3'- uCCaGCUUCGACCUGCUGag------CGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 24117 0.68 0.593404
Target:  5'- cGGcUCGAAGCUGGGCaGCacagCGCccuccguagUGGCc -3'
miRNA:   3'- uCC-AGCUUCGACCUGcUGa---GCG---------ACCG- -5'
19295 5' -56.4 NC_004685.1 + 10155 0.68 0.582748
Target:  5'- cGGGa-GAAGCUGG-CGuACgCGUUGGCg -3'
miRNA:   3'- -UCCagCUUCGACCuGC-UGaGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.