miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 15658 0.66 0.503547
Target:  5'- cCGAG-GCuCGCgCGUUGCCGUGGauUCGaCCg -3'
miRNA:   3'- -GCUCgCG-GCG-GUAGUGGCGCC--AGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 5251 0.66 0.456048
Target:  5'- aCGAGgGCUGCaagacCAUCACCGaGGUCcgGCg -3'
miRNA:   3'- -GCUCgCGGCG-----GUAGUGGCgCCAG--CGg -5'
19297 3' -61.5 NC_004685.1 + 65045 0.66 0.512329
Target:  5'- uCGA-CGCCGuaggcgaCCAUC-UCGCGGUCggGCCa -3'
miRNA:   3'- -GCUcGCGGC-------GGUAGuGGCGCCAG--CGG- -5'
19297 3' -61.5 NC_004685.1 + 5964 0.66 0.474769
Target:  5'- gGAGCGCCGaCUAcgauccgCGCgUGCGGaCGCUg -3'
miRNA:   3'- gCUCGCGGC-GGUa------GUG-GCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 1808 0.66 0.473824
Target:  5'- -cAGCGCgaCGCCGgcgCGCCGCGaucccauGUCGaCCa -3'
miRNA:   3'- gcUCGCG--GCGGUa--GUGGCGC-------CAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 49239 0.66 0.484273
Target:  5'- cCGAaCGCagCGCCAUCAgCGCGcacaccUCGCCc -3'
miRNA:   3'- -GCUcGCG--GCGGUAGUgGCGCc-----AGCGG- -5'
19297 3' -61.5 NC_004685.1 + 29549 0.66 0.484273
Target:  5'- cCGAGgacauCGCCGCCAUgACCGacaacuucCGCCa -3'
miRNA:   3'- -GCUC-----GCGGCGGUAgUGGCgcca----GCGG- -5'
19297 3' -61.5 NC_004685.1 + 44841 0.66 0.456048
Target:  5'- cCGAuGgGCaaguCCAUCGCCGCGGgcaUCGaCCa -3'
miRNA:   3'- -GCU-CgCGgc--GGUAGUGGCGCC---AGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 1905 0.66 0.493867
Target:  5'- cCGuGC-CCGCUGcgGCCGCGGUUGgCg -3'
miRNA:   3'- -GCuCGcGGCGGUagUGGCGCCAGCgG- -5'
19297 3' -61.5 NC_004685.1 + 41314 0.66 0.513308
Target:  5'- aCGcAGCGaaCGUCAcguUCACUGCGGUCaGCg -3'
miRNA:   3'- -GC-UCGCg-GCGGU---AGUGGCGCCAG-CGg -5'
19297 3' -61.5 NC_004685.1 + 60212 0.66 0.513308
Target:  5'- cCGA-CGCCGCCGacaAUCGCGGgcagCGUg -3'
miRNA:   3'- -GCUcGCGGCGGUag-UGGCGCCa---GCGg -5'
19297 3' -61.5 NC_004685.1 + 28053 0.66 0.484273
Target:  5'- -aGGCGCgGgCCAagGCUGaggcugaGGUCGCCg -3'
miRNA:   3'- gcUCGCGgC-GGUagUGGCg------CCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 8494 0.66 0.464424
Target:  5'- uGAGCGCCGgUgggGUCcgcuaccggauggGCCGCaGUCGaCCa -3'
miRNA:   3'- gCUCGCGGCgG---UAG-------------UGGCGcCAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 492 0.66 0.500634
Target:  5'- uGAGCGCagacauGCUgagCACCGCguugacuugcacgaGGUCGUCg -3'
miRNA:   3'- gCUCGCGg-----CGGua-GUGGCG--------------CCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 38789 0.66 0.503547
Target:  5'- -cGGCGguUCGCaCAcCAuCCGCGGUCGCa -3'
miRNA:   3'- gcUCGC--GGCG-GUaGU-GGCGCCAGCGg -5'
19297 3' -61.5 NC_004685.1 + 16574 0.66 0.493867
Target:  5'- uGGGCGCUGCCGUCGCCuCaG-CaCCu -3'
miRNA:   3'- gCUCGCGGCGGUAGUGGcGcCaGcGG- -5'
19297 3' -61.5 NC_004685.1 + 51317 0.66 0.513308
Target:  5'- -cAGCGUCGgUGUCugugacGCCGCGGUUGUa -3'
miRNA:   3'- gcUCGCGGCgGUAG------UGGCGCCAGCGg -5'
19297 3' -61.5 NC_004685.1 + 43856 0.66 0.497729
Target:  5'- --cGCGCCcagcggcaucgucaCCAUCGUCGCGGUCgGCCc -3'
miRNA:   3'- gcuCGCGGc-------------GGUAGUGGCGCCAG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 45534 0.66 0.465359
Target:  5'- uGAGCGCgGUgAUCA-CGCGG--GCCa -3'
miRNA:   3'- gCUCGCGgCGgUAGUgGCGCCagCGG- -5'
19297 3' -61.5 NC_004685.1 + 16144 0.66 0.474769
Target:  5'- gGAGUcgGCCGCgCcgCGCCa-GGUCGUCa -3'
miRNA:   3'- gCUCG--CGGCG-GuaGUGGcgCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.