miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 53140 1.1 0.00032
Target:  5'- uCGAGCGCCGCCAUCACCGCGGUCGCCu -3'
miRNA:   3'- -GCUCGCGGCGGUAGUGGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 54752 0.79 0.074006
Target:  5'- --cGCaCCGCCAUCGCCGCG-UCGCCc -3'
miRNA:   3'- gcuCGcGGCGGUAGUGGCGCcAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 10380 0.79 0.074006
Target:  5'- gCGA-CGCCGCCAUCgacGCCGCGGUgGgCCu -3'
miRNA:   3'- -GCUcGCGGCGGUAG---UGGCGCCAgC-GG- -5'
19297 3' -61.5 NC_004685.1 + 8767 0.76 0.108643
Target:  5'- gGAGCuGCCGCCGucguggcuugagggcUugaagcucaCGCCGCGGUCGCUg -3'
miRNA:   3'- gCUCG-CGGCGGU---------------A---------GUGGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 65525 0.76 0.113322
Target:  5'- gCGGGCGUCGUCGgcaagcUCGCCGaGGUCGUCg -3'
miRNA:   3'- -GCUCGCGGCGGU------AGUGGCgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 30717 0.76 0.116341
Target:  5'- --cGCGCCGCCGUCGCCGauGUCcaCCg -3'
miRNA:   3'- gcuCGCGGCGGUAGUGGCgcCAGc-GG- -5'
19297 3' -61.5 NC_004685.1 + 18349 0.75 0.132591
Target:  5'- cCGcAGUGCCGCCuacaACCGCGG-CGUCa -3'
miRNA:   3'- -GC-UCGCGGCGGuag-UGGCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 39466 0.75 0.132591
Target:  5'- uGuGCGUCGCCcagAUgGCCGCGG-CGCCc -3'
miRNA:   3'- gCuCGCGGCGG---UAgUGGCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 20025 0.74 0.146692
Target:  5'- uCGGGCGacCCGCCGgggcggaUCAUCGCGGgguucgUCGCCa -3'
miRNA:   3'- -GCUCGC--GGCGGU-------AGUGGCGCC------AGCGG- -5'
19297 3' -61.5 NC_004685.1 + 45324 0.74 0.147071
Target:  5'- gGAuUGCCGCCAaccCGCCGCGGUUGUUg -3'
miRNA:   3'- gCUcGCGGCGGUa--GUGGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 4389 0.74 0.15091
Target:  5'- --cGCGCCGCCAgccuuguagUCGCC--GGUCGCCg -3'
miRNA:   3'- gcuCGCGGCGGU---------AGUGGcgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 28879 0.74 0.158862
Target:  5'- gGAGCGCCGCaaggCGCUGacCGGcCGCCg -3'
miRNA:   3'- gCUCGCGGCGgua-GUGGC--GCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 40610 0.73 0.167191
Target:  5'- cCGAaCGCCGCCG-CGCCaGCGGUCaGCa -3'
miRNA:   3'- -GCUcGCGGCGGUaGUGG-CGCCAG-CGg -5'
19297 3' -61.5 NC_004685.1 + 16314 0.73 0.189744
Target:  5'- aCGAGCugGCCaG-CAUCGCCGCGGccaccggCGCCg -3'
miRNA:   3'- -GCUCG--CGG-CgGUAGUGGCGCCa------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 20254 0.73 0.194564
Target:  5'- --cGCGCCGUCGacCACUG-GGUCGCCg -3'
miRNA:   3'- gcuCGCGGCGGUa-GUGGCgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 66082 0.72 0.199491
Target:  5'- -uGGUGCCGCCGUagUCGCGGU-GCCg -3'
miRNA:   3'- gcUCGCGGCGGUAguGGCGCCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 50325 0.72 0.199491
Target:  5'- gCGGGCuGCCgggGCCGacuUCGCCGCGG-CGCa -3'
miRNA:   3'- -GCUCG-CGG---CGGU---AGUGGCGCCaGCGg -5'
19297 3' -61.5 NC_004685.1 + 17166 0.72 0.209671
Target:  5'- -uGGCGUCGgCGuUCGCCGCGGcgcugCGCCu -3'
miRNA:   3'- gcUCGCGGCgGU-AGUGGCGCCa----GCGG- -5'
19297 3' -61.5 NC_004685.1 + 136 0.72 0.209671
Target:  5'- gCGGGCGCgGCU---GCCGgGGUgGCCg -3'
miRNA:   3'- -GCUCGCGgCGGuagUGGCgCCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 48904 0.72 0.214927
Target:  5'- gGGGCuGCCGCgCAUCGCCgagauaGCGG-CGUCg -3'
miRNA:   3'- gCUCG-CGGCG-GUAGUGG------CGCCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.