miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 22677 0.7 0.287134
Target:  5'- gCGGG-GCCacugucgaggagGUUGUCACCGCGGUCGgCg -3'
miRNA:   3'- -GCUCgCGG------------CGGUAGUGGCGCCAGCgG- -5'
19297 3' -61.5 NC_004685.1 + 8838 0.71 0.231377
Target:  5'- uCGAuGUGCgGCaggcgGUCACCGCGGgugacccgUCGCCg -3'
miRNA:   3'- -GCU-CGCGgCGg----UAGUGGCGCC--------AGCGG- -5'
19297 3' -61.5 NC_004685.1 + 52563 0.71 0.231377
Target:  5'- -cAGCgGCCGCuCGUUGCCGuCGG-CGCCg -3'
miRNA:   3'- gcUCG-CGGCG-GUAGUGGC-GCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 51549 0.71 0.254946
Target:  5'- uGAGCGCCGCgGUCGgUGCcacCGCCc -3'
miRNA:   3'- gCUCGCGGCGgUAGUgGCGccaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 59719 0.71 0.254946
Target:  5'- uCGGGUGCgGCguaguccaCGUCGCCGCGGauggcggUGCCg -3'
miRNA:   3'- -GCUCGCGgCG--------GUAGUGGCGCCa------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 26527 0.71 0.254946
Target:  5'- uCGucuCGCCGCCGcacUCGgUGCGcGUCGCCa -3'
miRNA:   3'- -GCuc-GCGGCGGU---AGUgGCGC-CAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 43057 0.71 0.261138
Target:  5'- -cGGUGCgGCgGugcUCGCCGCGGUCGgCu -3'
miRNA:   3'- gcUCGCGgCGgU---AGUGGCGCCAGCgG- -5'
19297 3' -61.5 NC_004685.1 + 54614 0.71 0.263649
Target:  5'- cCGAGCaGCUccccgGCCAccucgUCACCGCGGUgcgaaccgagcagcgUGCCg -3'
miRNA:   3'- -GCUCG-CGG-----CGGU-----AGUGGCGCCA---------------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 47053 0.7 0.28646
Target:  5'- gCGA-CGCaGCCcaccgggAUCACCccgGCGGUCGCCa -3'
miRNA:   3'- -GCUcGCGgCGG-------UAGUGG---CGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 9780 0.72 0.225779
Target:  5'- uGAGCGgcugggguUCGCC--UACCGCGGcCGCCg -3'
miRNA:   3'- gCUCGC--------GGCGGuaGUGGCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 55006 0.72 0.225779
Target:  5'- uCGGGCaCCGCCucgggGUCACCcuCGGUCGaCCa -3'
miRNA:   3'- -GCUCGcGGCGG-----UAGUGGc-GCCAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 7410 0.72 0.217061
Target:  5'- aGGGCGCagGCCAgcgCGCCGCGcGUaucacuccccgccccCGCCg -3'
miRNA:   3'- gCUCGCGg-CGGUa--GUGGCGC-CA---------------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 8767 0.76 0.108643
Target:  5'- gGAGCuGCCGCCGucguggcuugagggcUugaagcucaCGCCGCGGUCGCUg -3'
miRNA:   3'- gCUCG-CGGCGGU---------------A---------GUGGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 18349 0.75 0.132591
Target:  5'- cCGcAGUGCCGCCuacaACCGCGG-CGUCa -3'
miRNA:   3'- -GC-UCGCGGCGGuag-UGGCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 4389 0.74 0.15091
Target:  5'- --cGCGCCGCCAgccuuguagUCGCC--GGUCGCCg -3'
miRNA:   3'- gcuCGCGGCGGU---------AGUGGcgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 28879 0.74 0.158862
Target:  5'- gGAGCGCCGCaaggCGCUGacCGGcCGCCg -3'
miRNA:   3'- gCUCGCGGCGgua-GUGGC--GCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 50325 0.72 0.199491
Target:  5'- gCGGGCuGCCgggGCCGacuUCGCCGCGG-CGCa -3'
miRNA:   3'- -GCUCG-CGG---CGGU---AGUGGCGCCaGCGg -5'
19297 3' -61.5 NC_004685.1 + 66082 0.72 0.199491
Target:  5'- -uGGUGCCGCCGUagUCGCGGU-GCCg -3'
miRNA:   3'- gcUCGCGGCGGUAguGGCGCCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 19238 0.72 0.214927
Target:  5'- -cAGCcCCGCCAUCAUgcaCGCuGUCGCCu -3'
miRNA:   3'- gcUCGcGGCGGUAGUG---GCGcCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 43516 0.72 0.214927
Target:  5'- aGAGUGCgGCCuacugguaCGCCaaCGGUCGCCg -3'
miRNA:   3'- gCUCGCGgCGGua------GUGGc-GCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.