miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 136 0.72 0.209671
Target:  5'- gCGGGCGCgGCU---GCCGgGGUgGCCg -3'
miRNA:   3'- -GCUCGCGgCGGuagUGGCgCCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 492 0.66 0.500634
Target:  5'- uGAGCGCagacauGCUgagCACCGCguugacuugcacgaGGUCGUCg -3'
miRNA:   3'- gCUCGCGg-----CGGua-GUGGCG--------------CCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 1364 0.66 0.459761
Target:  5'- gGGGCGCaCGCaCAcucggacccgcacacUCGgacCCGCGGcgCGCCu -3'
miRNA:   3'- gCUCGCG-GCG-GU---------------AGU---GGCGCCa-GCGG- -5'
19297 3' -61.5 NC_004685.1 + 1602 0.67 0.419844
Target:  5'- aGGGCGaggaCCGCCu--GCUGCGGgcacaCGCCg -3'
miRNA:   3'- gCUCGC----GGCGGuagUGGCGCCa----GCGG- -5'
19297 3' -61.5 NC_004685.1 + 1808 0.66 0.473824
Target:  5'- -cAGCGCgaCGCCGgcgCGCCGCGaucccauGUCGaCCa -3'
miRNA:   3'- gcUCGCG--GCGGUa--GUGGCGC-------CAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 1905 0.66 0.493867
Target:  5'- cCGuGC-CCGCUGcgGCCGCGGUUGgCg -3'
miRNA:   3'- -GCuCGcGGCGGUagUGGCGCCAGCgG- -5'
19297 3' -61.5 NC_004685.1 + 2584 0.66 0.484273
Target:  5'- cCGAGCGUCGCaacgacaGCCucgagGUGGUCuGCCu -3'
miRNA:   3'- -GCUCGCGGCGguag---UGG-----CGCCAG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 2684 0.68 0.384599
Target:  5'- gGAGacgcggccgcuguCGCCGCCAUCACCGgcaccgugaugaUGGg-GCCg -3'
miRNA:   3'- gCUC-------------GCGGCGGUAGUGGC------------GCCagCGG- -5'
19297 3' -61.5 NC_004685.1 + 3180 0.68 0.360882
Target:  5'- -cAGCGCCGCCAUgucgauggUGCCGuCGGguuugCGCg -3'
miRNA:   3'- gcUCGCGGCGGUA--------GUGGC-GCCa----GCGg -5'
19297 3' -61.5 NC_004685.1 + 3834 0.66 0.456048
Target:  5'- -cGGUGCUGCuCAUCGCCGCGc-UGCUc -3'
miRNA:   3'- gcUCGCGGCG-GUAGUGGCGCcaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 4389 0.74 0.15091
Target:  5'- --cGCGCCGCCAgccuuguagUCGCC--GGUCGCCg -3'
miRNA:   3'- gcuCGCGGCGGU---------AGUGGcgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 4981 0.71 0.254946
Target:  5'- gGGGCGCCGUgAgcaaGCaGUGGUCGCUg -3'
miRNA:   3'- gCUCGCGGCGgUag--UGgCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 5251 0.66 0.456048
Target:  5'- aCGAGgGCUGCaagacCAUCACCGaGGUCcgGCg -3'
miRNA:   3'- -GCUCgCGGCG-----GUAGUGGCgCCAG--CGg -5'
19297 3' -61.5 NC_004685.1 + 5907 0.68 0.393861
Target:  5'- aGAGgGUgGCCAUCGCguucaucccuCGCGG-CGCg -3'
miRNA:   3'- gCUCgCGgCGGUAGUG----------GCGCCaGCGg -5'
19297 3' -61.5 NC_004685.1 + 5964 0.66 0.474769
Target:  5'- gGAGCGCCGaCUAcgauccgCGCgUGCGGaCGCUg -3'
miRNA:   3'- gCUCGCGGC-GGUa------GUG-GCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 7410 0.72 0.217061
Target:  5'- aGGGCGCagGCCAgcgCGCCGCGcGUaucacuccccgccccCGCCg -3'
miRNA:   3'- gCUCGCGg-CGGUa--GUGGCGC-CA---------------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 8191 0.66 0.484273
Target:  5'- gCGA-CGCCGCCGg----GCGGUCgGCCg -3'
miRNA:   3'- -GCUcGCGGCGGUaguggCGCCAG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 8494 0.66 0.464424
Target:  5'- uGAGCGCCGgUgggGUCcgcuaccggauggGCCGCaGUCGaCCa -3'
miRNA:   3'- gCUCGCGGCgG---UAG-------------UGGCGcCAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 8767 0.76 0.108643
Target:  5'- gGAGCuGCCGCCGucguggcuugagggcUugaagcucaCGCCGCGGUCGCUg -3'
miRNA:   3'- gCUCG-CGGCGGU---------------A---------GUGGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 8838 0.71 0.231377
Target:  5'- uCGAuGUGCgGCaggcgGUCACCGCGGgugacccgUCGCCg -3'
miRNA:   3'- -GCU-CGCGgCGg----UAGUGGCGCC--------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.