miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 5' -57.1 NC_004685.1 + 33508 0.66 0.694707
Target:  5'- gUGGUGG-CCCaGC-GCGACgGGUUCGc -3'
miRNA:   3'- -ACUACCuGGGcUGaCGCUGgUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 1840 0.66 0.694707
Target:  5'- ----cGACCaucggGACgGUGACCAGCUCGg -3'
miRNA:   3'- acuacCUGGg----CUGaCGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 50563 0.66 0.694707
Target:  5'- cGAUGGGCgCCGGCgccGCcuCCAGCg-- -3'
miRNA:   3'- aCUACCUG-GGCUGa--CGcuGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 30945 0.66 0.694707
Target:  5'- ---aGGucGCCCGccucaGCgGCGAUCGGCUCAu -3'
miRNA:   3'- acuaCC--UGGGC-----UGaCGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 37660 0.66 0.684093
Target:  5'- gGAUGGACguUCGACUccagugugacucGCaccgccgggucGACCGGCUCGg -3'
miRNA:   3'- aCUACCUG--GGCUGA------------CG-----------CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 27116 0.66 0.684093
Target:  5'- gGA-GGACgUgGGCUGaUGGCCGGCUCu -3'
miRNA:   3'- aCUaCCUG-GgCUGAC-GCUGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 17096 0.66 0.684093
Target:  5'- cGGccUGGuCCacauCGACUGCGACCuguacAGCUCc -3'
miRNA:   3'- aCU--ACCuGG----GCUGACGCUGG-----UCGAGu -5'
19306 5' -57.1 NC_004685.1 + 62365 0.66 0.684093
Target:  5'- aGAUGGugaACCCaGCcGCuuCCAGCUCGu -3'
miRNA:   3'- aCUACC---UGGGcUGaCGcuGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 37567 0.66 0.684093
Target:  5'- cGGUGcGccACCCGgugugaGCUGCGGCgAGUUCGg -3'
miRNA:   3'- aCUAC-C--UGGGC------UGACGCUGgUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 44259 0.66 0.667016
Target:  5'- cGAucuUGGcGCCCGACuacaccaaggaagugUGgGACCAGCUg- -3'
miRNA:   3'- aCU---ACC-UGGGCUG---------------ACgCUGGUCGAgu -5'
19306 5' -57.1 NC_004685.1 + 21551 0.66 0.662732
Target:  5'- gGGUGGugCCGGCaUGagcuaCGACCuggaccugcguAGCUCGg -3'
miRNA:   3'- aCUACCugGGCUG-AC-----GCUGG-----------UCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 45081 0.66 0.652006
Target:  5'- aGGUGGGCgCGG-UGUGGCCggacuacggcGGCUCAc -3'
miRNA:   3'- aCUACCUGgGCUgACGCUGG----------UCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 24452 0.67 0.630511
Target:  5'- aGAUGGcguucuuguCCUG-CUGCGAaucacCCGGCUCGg -3'
miRNA:   3'- aCUACCu--------GGGCuGACGCU-----GGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 23866 0.67 0.630511
Target:  5'- cGAcGGugCCGaugcGCUGCGccaccuccaggGCCAGCUUg -3'
miRNA:   3'- aCUaCCugGGC----UGACGC-----------UGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 63123 0.67 0.630511
Target:  5'- ---cGGugCCGAgCUGCcagcaccuccagGAUCAGCUCGg -3'
miRNA:   3'- acuaCCugGGCU-GACG------------CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 33647 0.67 0.619761
Target:  5'- gUGAgaacGGcAUCCGGCUGCGACUcaaGGCguUCAg -3'
miRNA:   3'- -ACUa---CC-UGGGCUGACGCUGG---UCG--AGU- -5'
19306 5' -57.1 NC_004685.1 + 48168 0.67 0.609021
Target:  5'- cGAUGuGGCCCGGCUcGuCGGgCAGCa-- -3'
miRNA:   3'- aCUAC-CUGGGCUGA-C-GCUgGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 7384 0.67 0.605802
Target:  5'- cGAUGGuCCCGACggcaaGCGgugcgagggcgcagGCCAGCg-- -3'
miRNA:   3'- aCUACCuGGGCUGa----CGC--------------UGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 40601 0.67 0.598301
Target:  5'- uUGAUGGugCCGAacgccgccGCG-CCAGCggUCAg -3'
miRNA:   3'- -ACUACCugGGCUga------CGCuGGUCG--AGU- -5'
19306 5' -57.1 NC_004685.1 + 16947 0.67 0.576949
Target:  5'- aGcAUGGAgauucagcaucaCCCGACUGCccGGCCGGCg-- -3'
miRNA:   3'- aC-UACCU------------GGGCUGACG--CUGGUCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.