miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19322 5' -55.7 NC_004685.1 + 8028 0.66 0.794396
Target:  5'- aCCUGGGcGACGggcUGUACGUCaCCCGc -3'
miRNA:   3'- cGGACUUaCUGCa--GCAUGCGGcGGGC- -5'
19322 5' -55.7 NC_004685.1 + 45354 0.66 0.794396
Target:  5'- aGCggGAGUcGACGUCGccgaaccCGCCuGCCCGc -3'
miRNA:   3'- -CGgaCUUA-CUGCAGCau-----GCGG-CGGGC- -5'
19322 5' -55.7 NC_004685.1 + 36599 0.66 0.794396
Target:  5'- cGCCgaGGAccUGGCGg-GUGCGCuCGCCgCGg -3'
miRNA:   3'- -CGGa-CUU--ACUGCagCAUGCG-GCGG-GC- -5'
19322 5' -55.7 NC_004685.1 + 700 0.66 0.788709
Target:  5'- aGCgUGggUGGCGgCGggagggugaucccgACGCCGUgCGa -3'
miRNA:   3'- -CGgACuuACUGCaGCa-------------UGCGGCGgGC- -5'
19322 5' -55.7 NC_004685.1 + 30335 0.66 0.784886
Target:  5'- cGCC-GAggGugGUCugGUccGCGCCGCCg- -3'
miRNA:   3'- -CGGaCUuaCugCAG--CA--UGCGGCGGgc -5'
19322 5' -55.7 NC_004685.1 + 100 0.66 0.784886
Target:  5'- gGCCUGu-UGGCGUgG-ACGCCGUUg- -3'
miRNA:   3'- -CGGACuuACUGCAgCaUGCGGCGGgc -5'
19322 5' -55.7 NC_004685.1 + 33752 0.66 0.784886
Target:  5'- uGCCcGGcgaGACGUgGUGCGUCGUCgCGg -3'
miRNA:   3'- -CGGaCUua-CUGCAgCAUGCGGCGG-GC- -5'
19322 5' -55.7 NC_004685.1 + 14338 0.66 0.784886
Target:  5'- aGCagUGGAUGAacgccaaccCGUCGUGC-CCGCaCCGc -3'
miRNA:   3'- -CGg-ACUUACU---------GCAGCAUGcGGCG-GGC- -5'
19322 5' -55.7 NC_004685.1 + 8212 0.66 0.783927
Target:  5'- uCCUGuGAUGcccgacgacaacaGCGUCGgcuacggcgACGCUGCCCa -3'
miRNA:   3'- cGGAC-UUAC-------------UGCAGCa--------UGCGGCGGGc -5'
19322 5' -55.7 NC_004685.1 + 54891 0.66 0.775226
Target:  5'- uCCUGcAAUGugGa-GUACGCCGCggCCa -3'
miRNA:   3'- cGGAC-UUACugCagCAUGCGGCG--GGc -5'
19322 5' -55.7 NC_004685.1 + 25327 0.66 0.775226
Target:  5'- gGCCU---UGGCGcaUCGUcuUGCCGCCCu -3'
miRNA:   3'- -CGGAcuuACUGC--AGCAu-GCGGCGGGc -5'
19322 5' -55.7 NC_004685.1 + 1871 0.66 0.775226
Target:  5'- gGCCagguugaGGAUGGCGUCGgucAgGCCGCggCCGu -3'
miRNA:   3'- -CGGa------CUUACUGCAGCa--UgCGGCG--GGC- -5'
19322 5' -55.7 NC_004685.1 + 31580 0.66 0.775226
Target:  5'- cGCCUGAAUGcggcccagcAgGUCuUGCaGCUGCUCGg -3'
miRNA:   3'- -CGGACUUAC---------UgCAGcAUG-CGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 2901 0.66 0.775226
Target:  5'- aCCUGG-UGACGgUGUggccAUGCCgGCCCGa -3'
miRNA:   3'- cGGACUuACUGCaGCA----UGCGG-CGGGC- -5'
19322 5' -55.7 NC_004685.1 + 14288 0.66 0.765428
Target:  5'- aGCCUGAccGAgGgugCG-ACGCUGgCCGa -3'
miRNA:   3'- -CGGACUuaCUgCa--GCaUGCGGCgGGC- -5'
19322 5' -55.7 NC_004685.1 + 34442 0.66 0.755501
Target:  5'- ---cGggUGAUGUCGUcgaugacaGCGCCGCaCGu -3'
miRNA:   3'- cggaCuuACUGCAGCA--------UGCGGCGgGC- -5'
19322 5' -55.7 NC_004685.1 + 31402 0.66 0.755501
Target:  5'- cCCUGGaaacuucgGUGAcCG-CGUGCccuacgguuuGCCGCCCGg -3'
miRNA:   3'- cGGACU--------UACU-GCaGCAUG----------CGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 64975 0.67 0.745455
Target:  5'- gGCCgGGAUGAuCG-CGUAgcCGCacaGCCCGu -3'
miRNA:   3'- -CGGaCUUACU-GCaGCAU--GCGg--CGGGC- -5'
19322 5' -55.7 NC_004685.1 + 3466 0.67 0.745455
Target:  5'- uGCaCUGAGggcagcccuuguUGGCGUCGUG-GCCGCacaCGu -3'
miRNA:   3'- -CG-GACUU------------ACUGCAGCAUgCGGCGg--GC- -5'
19322 5' -55.7 NC_004685.1 + 57844 0.67 0.745455
Target:  5'- aCCgcaGAUGACGUugaccuccaccCGUgagaACGCCGCCUGg -3'
miRNA:   3'- cGGac-UUACUGCA-----------GCA----UGCGGCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.