miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 3' -59.7 NC_004685.1 + 55385 0.66 0.57038
Target:  5'- cCGCAGCcucgGCCagcgucGCACCCUCGGuCAGGc- -3'
miRNA:   3'- -GCGUCGa---CGG------UGUGGGGGCU-GUUCcc -5'
19384 3' -59.7 NC_004685.1 + 46454 0.66 0.57038
Target:  5'- -cCAGCUucGCCGCGgCCuuGGCGucgAGGGu -3'
miRNA:   3'- gcGUCGA--CGGUGUgGGggCUGU---UCCC- -5'
19384 3' -59.7 NC_004685.1 + 10984 0.66 0.57038
Target:  5'- cCGUcgaAGCUGCCGCcggagUUCCUGcGCAAGGGc -3'
miRNA:   3'- -GCG---UCGACGGUGu----GGGGGC-UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 62549 0.66 0.560051
Target:  5'- gGCAGgccaUGCCGCcucucuCUCCUGAguGGGGg -3'
miRNA:   3'- gCGUCg---ACGGUGu-----GGGGGCUguUCCC- -5'
19384 3' -59.7 NC_004685.1 + 17526 0.66 0.560051
Target:  5'- cCGUGGCgugGCgACGCCCCUGGuCcAGGu -3'
miRNA:   3'- -GCGUCGa--CGgUGUGGGGGCU-GuUCCc -5'
19384 3' -59.7 NC_004685.1 + 9782 0.66 0.549775
Target:  5'- aGCGGCUGggguucgccuaCCGCgGCCgCCgCGGCGAGGu -3'
miRNA:   3'- gCGUCGAC-----------GGUG-UGG-GG-GCUGUUCCc -5'
19384 3' -59.7 NC_004685.1 + 21652 0.66 0.549775
Target:  5'- cCGaCGGUggGCCguACAgCCCCGugGAGGu -3'
miRNA:   3'- -GC-GUCGa-CGG--UGUgGGGGCugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 35694 0.66 0.549775
Target:  5'- aCGCGGC-GCaGCAUCCCCGACu---- -3'
miRNA:   3'- -GCGUCGaCGgUGUGGGGGCUGuuccc -5'
19384 3' -59.7 NC_004685.1 + 57251 0.66 0.549775
Target:  5'- gCGCagGGCUGCCGCcUUCUCGGCGAuGGc -3'
miRNA:   3'- -GCG--UCGACGGUGuGGGGGCUGUUcCC- -5'
19384 3' -59.7 NC_004685.1 + 49379 0.66 0.549775
Target:  5'- uCGCAGUcgcagUGCCgacagcuggugaGCACuuccuCCCCGuCGAGGGu -3'
miRNA:   3'- -GCGUCG-----ACGG------------UGUG-----GGGGCuGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 30123 0.66 0.549775
Target:  5'- gGCAGUgucgcgGCCGCACUcggCCCGGCAGc-- -3'
miRNA:   3'- gCGUCGa-----CGGUGUGG---GGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 13351 0.66 0.549775
Target:  5'- uGCAGCUGCUguACGCCaUCCGcaACAAGc- -3'
miRNA:   3'- gCGUCGACGG--UGUGG-GGGC--UGUUCcc -5'
19384 3' -59.7 NC_004685.1 + 37829 0.66 0.546703
Target:  5'- uGCGGCUGCUgcgacugcugcggcGCauaGCCCUgCGGCAGcGGGa -3'
miRNA:   3'- gCGUCGACGG--------------UG---UGGGG-GCUGUU-CCC- -5'
19384 3' -59.7 NC_004685.1 + 23933 0.66 0.539558
Target:  5'- gCGCAGCgaacaCGCGCCgCCCGGCGAc-- -3'
miRNA:   3'- -GCGUCGacg--GUGUGG-GGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 66922 0.66 0.539558
Target:  5'- uCGCGcGCcGCgGCACCgugCCCGACGAGa- -3'
miRNA:   3'- -GCGU-CGaCGgUGUGG---GGGCUGUUCcc -5'
19384 3' -59.7 NC_004685.1 + 39514 0.66 0.539558
Target:  5'- uCGCAGCgauaGCCGguCCCgCGAUAccugcgauggccGGGGc -3'
miRNA:   3'- -GCGUCGa---CGGUguGGGgGCUGU------------UCCC- -5'
19384 3' -59.7 NC_004685.1 + 58615 0.66 0.539558
Target:  5'- gCGCAGUgucGCCGCGgCCaCCGACAu--- -3'
miRNA:   3'- -GCGUCGa--CGGUGUgGG-GGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 31821 0.66 0.529406
Target:  5'- aCGCGGCUGgCugACgCUCCGACGc--- -3'
miRNA:   3'- -GCGUCGACgGugUG-GGGGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 56355 0.66 0.529406
Target:  5'- uGCAGCUcaucGCCAgACUCCgCGGCGGcGGc -3'
miRNA:   3'- gCGUCGA----CGGUgUGGGG-GCUGUUcCC- -5'
19384 3' -59.7 NC_004685.1 + 52706 0.66 0.529406
Target:  5'- gGCAGguCUGCC-CACCCUCGcCGGccGGGc -3'
miRNA:   3'- gCGUC--GACGGuGUGGGGGCuGUU--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.