Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19389 | 5' | -56.4 | NC_004685.1 | + | 56374 | 0.66 | 0.727618 |
Target: 5'- -cCGCGGCGGCGGCaaCGccGGUGGa- -3' miRNA: 3'- caGCGUUGCUGUCGgaGCu-CCACCag -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 47593 | 0.66 | 0.727618 |
Target: 5'- cGUCaGCAGCG-CGGCgUCGAGcaucuucuUGGUCu -3' miRNA: 3'- -CAG-CGUUGCuGUCGgAGCUCc-------ACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 49521 | 0.66 | 0.717183 |
Target: 5'- cGUCGaGACG-CGGCgUCGGGGacagcggGGUCu -3' miRNA: 3'- -CAGCgUUGCuGUCGgAGCUCCa------CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 66256 | 0.66 | 0.717183 |
Target: 5'- aUCGCAGCGGguCAGCCgCaGGGUGuUCa -3' miRNA: 3'- cAGCGUUGCU--GUCGGaGcUCCACcAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 17435 | 0.66 | 0.706668 |
Target: 5'- -gCGCGAUgaaGGCGGCCcUGccGGUGGUCa -3' miRNA: 3'- caGCGUUG---CUGUCGGaGCu-CCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 28522 | 0.66 | 0.706668 |
Target: 5'- gGUCGCGggccGCGAgaAGCacgaCGuGGUGGUCa -3' miRNA: 3'- -CAGCGU----UGCUg-UCGga--GCuCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 49795 | 0.66 | 0.696082 |
Target: 5'- uUCGCAGaucaGGcCGGCCUCGuGGUacgGGUUc -3' miRNA: 3'- cAGCGUUg---CU-GUCGGAGCuCCA---CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 17279 | 0.66 | 0.696082 |
Target: 5'- gGUCGuCGGCcACGGCUUCGAGcaGUGGg- -3' miRNA: 3'- -CAGC-GUUGcUGUCGGAGCUC--CACCag -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 35823 | 0.67 | 0.679026 |
Target: 5'- -gCGCAACGAgguCGGCCcguaucacccuggcaUCGAGGUGuUCc -3' miRNA: 3'- caGCGUUGCU---GUCGG---------------AGCUCCACcAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 16568 | 0.67 | 0.674743 |
Target: 5'- --aGCGACGACGGCggCGuGcUGGUCa -3' miRNA: 3'- cagCGUUGCUGUCGgaGCuCcACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 42692 | 0.67 | 0.674743 |
Target: 5'- uGUCGCcguCGGCAGgCagCGccuGGUGGUCu -3' miRNA: 3'- -CAGCGuu-GCUGUCgGa-GCu--CCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 4659 | 0.67 | 0.674743 |
Target: 5'- cGUCGagGAUGGCGuGCCgu-GGGUGGUCg -3' miRNA: 3'- -CAGCg-UUGCUGU-CGGagcUCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 15057 | 0.67 | 0.674743 |
Target: 5'- uUCGCAcCG-CGGUgaCGAGGUGGcCg -3' miRNA: 3'- cAGCGUuGCuGUCGgaGCUCCACCaG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 3213 | 0.67 | 0.653248 |
Target: 5'- -gCGCGGCGGaaauGCCggggCGGGGUcggGGUCg -3' miRNA: 3'- caGCGUUGCUgu--CGGa---GCUCCA---CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 43054 | 0.67 | 0.642468 |
Target: 5'- cGUCGguGCGGCGGUgCUCGccGcGGUCg -3' miRNA: 3'- -CAGCguUGCUGUCG-GAGCucCaCCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 21616 | 0.67 | 0.631679 |
Target: 5'- -cCGCGAuCGAguGCUUCGAGcagcgGGUCg -3' miRNA: 3'- caGCGUU-GCUguCGGAGCUCca---CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 58696 | 0.68 | 0.56726 |
Target: 5'- -gCGCAggaacuccgGCGGCAGCUUCGAcG-GGUCg -3' miRNA: 3'- caGCGU---------UGCUGUCGGAGCUcCaCCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 51053 | 0.68 | 0.56726 |
Target: 5'- cGUCGUAGCcgccGACcGCCUCGuAGGU-GUCg -3' miRNA: 3'- -CAGCGUUG----CUGuCGGAGC-UCCAcCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 61043 | 0.68 | 0.566198 |
Target: 5'- uGUCGCcGCGAUAGCCccacguauccuggUCGuGGUuGUCg -3' miRNA: 3'- -CAGCGuUGCUGUCGG-------------AGCuCCAcCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 32198 | 0.68 | 0.566198 |
Target: 5'- -aCGCGggcuacgGCGGCGGCUUCaAGGUGGg- -3' miRNA: 3'- caGCGU-------UGCUGUCGGAGcUCCACCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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