Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19505 | 3' | -60.1 | NC_004685.1 | + | 666 | 0.66 | 0.546868 |
Target: 5'- gGCgGCCGGgucgGCAGCGCGcauaaacuucggcAGCGUGgGUg -3' miRNA: 3'- -CGgCGGCU----UGUCGCGC-------------UCGCGUgCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 18857 | 0.66 | 0.517459 |
Target: 5'- aCCGCCGAGCAGaucagaaaGCuGAcCGCGCGg- -3' miRNA: 3'- cGGCGGCUUGUCg-------CG-CUcGCGUGCgu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 26221 | 0.66 | 0.547892 |
Target: 5'- -aCGCCGGACuucaGGCGCGcGaGCAgGCGa -3' miRNA: 3'- cgGCGGCUUG----UCGCGCuCgCGUgCGU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 2434 | 0.66 | 0.547892 |
Target: 5'- gGCCGCCGGuggccuguucgACGGCGCG-GUccaaCAUGCc -3' miRNA: 3'- -CGGCGGCU-----------UGUCGCGCuCGc---GUGCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 7835 | 0.66 | 0.517459 |
Target: 5'- aUCGCUGcGCAGCGCGAG-GUGCcCAa -3' miRNA: 3'- cGGCGGCuUGUCGCGCUCgCGUGcGU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 45168 | 0.66 | 0.497549 |
Target: 5'- cGCCGUCGuGguG-GCGAaacuacGCGCACGCc -3' miRNA: 3'- -CGGCGGCuUguCgCGCU------CGCGUGCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 68340 | 0.66 | 0.547892 |
Target: 5'- cGCC-CCGggUccguguGUGCGuGCGCcGCGCGg -3' miRNA: 3'- -CGGcGGCuuGu-----CGCGCuCGCG-UGCGU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 42507 | 0.66 | 0.547892 |
Target: 5'- aGCCGCCGGugcugACGuguuCGCG-GUGCugGCc -3' miRNA: 3'- -CGGCGGCU-----UGUc---GCGCuCGCGugCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 51434 | 0.66 | 0.53768 |
Target: 5'- uGCUGCgGcauCGGUGCGAGCaccGUGCGCc -3' miRNA: 3'- -CGGCGgCuu-GUCGCGCUCG---CGUGCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 21077 | 0.66 | 0.53768 |
Target: 5'- gGCCGUCGGucuGCAGgGCGuG-GCugGUg -3' miRNA: 3'- -CGGCGGCU---UGUCgCGCuCgCGugCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 10722 | 0.66 | 0.53768 |
Target: 5'- gGCUGCCaugGAgcauugGCAGCGCGuGCGCGgaGUg -3' miRNA: 3'- -CGGCGG---CU------UGUCGCGCuCGCGUg-CGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 28447 | 0.66 | 0.497549 |
Target: 5'- --aGCCGAACGcGCGCGccaGGCGUACa-- -3' miRNA: 3'- cggCGGCUUGU-CGCGC---UCGCGUGcgu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 2872 | 0.66 | 0.497549 |
Target: 5'- uGCgGCCGGu--GCGCacGGCGCugGCc -3' miRNA: 3'- -CGgCGGCUuguCGCGc-UCGCGugCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 26533 | 0.66 | 0.53768 |
Target: 5'- cGCCGCCGcACucgguGCGCGucgccaggaucGCGCugGgCGa -3' miRNA: 3'- -CGGCGGCuUGu----CGCGCu----------CGCGugC-GU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 48352 | 0.66 | 0.547892 |
Target: 5'- cCCGUCGcACagGGUGCGGGUGacgaaGCGCAu -3' miRNA: 3'- cGGCGGCuUG--UCGCGCUCGCg----UGCGU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 25556 | 0.66 | 0.547892 |
Target: 5'- aUCGCgGAcuGCAGCGCGguGGUGCGCu-- -3' miRNA: 3'- cGGCGgCU--UGUCGCGC--UCGCGUGcgu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 19207 | 0.66 | 0.527533 |
Target: 5'- -gCGCCGAcCAGCuCGAcGCGCACugGCu -3' miRNA: 3'- cgGCGGCUuGUCGcGCU-CGCGUG--CGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 24570 | 0.66 | 0.517459 |
Target: 5'- uGCCcugaCCGAggACGGCGgaccCGAGCGgGCGCc -3' miRNA: 3'- -CGGc---GGCU--UGUCGC----GCUCGCgUGCGu -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 30188 | 0.66 | 0.517459 |
Target: 5'- cGCUG-CGAcCAGCGCGcucgucggccugGGCGC-CGCGg -3' miRNA: 3'- -CGGCgGCUuGUCGCGC------------UCGCGuGCGU- -5' |
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19505 | 3' | -60.1 | NC_004685.1 | + | 63011 | 0.66 | 0.547892 |
Target: 5'- aGCUGCC---CGGCGUGGGCGCG-GUg -3' miRNA: 3'- -CGGCGGcuuGUCGCGCUCGCGUgCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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