miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19505 3' -60.1 NC_004685.1 + 13672 0.7 0.322196
Target:  5'- aUCGCCGggUcguacuGGcCGCGGGUGCgGCGCAc -3'
miRNA:   3'- cGGCGGCuuG------UC-GCGCUCGCG-UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 32268 0.72 0.235354
Target:  5'- gGCCGCCGGug-GCGCGGGCGguccuggugGCGCGg -3'
miRNA:   3'- -CGGCGGCUuguCGCGCUCGCg--------UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 37299 0.71 0.259137
Target:  5'- gGCgGCCGAGCAGUuggagcaGUGGGCGCAgGg- -3'
miRNA:   3'- -CGgCGGCUUGUCG-------CGCUCGCGUgCgu -5'
19505 3' -60.1 NC_004685.1 + 33064 0.71 0.26619
Target:  5'- aCCGUCGAGguGCGCGgcaaaacaccggAGCGCAcCGCc -3'
miRNA:   3'- cGGCGGCUUguCGCGC------------UCGCGU-GCGu -5'
19505 3' -60.1 NC_004685.1 + 59471 0.71 0.279412
Target:  5'- cGCCGuuGGACAGCuCGGGCgGCG-GCGg -3'
miRNA:   3'- -CGGCggCUUGUCGcGCUCG-CGUgCGU- -5'
19505 3' -60.1 NC_004685.1 + 1918 0.71 0.279412
Target:  5'- gGCCGCgGuuggcgucAGCGGCGaCGGGCGUggGCAa -3'
miRNA:   3'- -CGGCGgC--------UUGUCGC-GCUCGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 12446 0.71 0.286216
Target:  5'- cGCCGCCGAGCgcccggucAGCugaccagucgacGUuGGCGCGCGCu -3'
miRNA:   3'- -CGGCGGCUUG--------UCG------------CGcUCGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 30478 0.7 0.293151
Target:  5'- aGCCGCCGccaGGCGGCGCGuggAGCGUucCGgGg -3'
miRNA:   3'- -CGGCGGC---UUGUCGCGC---UCGCGu-GCgU- -5'
19505 3' -60.1 NC_004685.1 + 28928 0.7 0.307411
Target:  5'- gGCCGCUGGGCGGCGgCaaccuuGGCGCGCuCAc -3'
miRNA:   3'- -CGGCGGCUUGUCGC-Gc-----UCGCGUGcGU- -5'
19505 3' -60.1 NC_004685.1 + 539 0.72 0.218329
Target:  5'- cCCGCC-AGCAGCGCGcgGGUGUcgACGCAc -3'
miRNA:   3'- cGGCGGcUUGUCGCGC--UCGCG--UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 60784 0.73 0.212892
Target:  5'- cGCCGCCGAcucCAGCGCcgcaauGUGCcaACGCAg -3'
miRNA:   3'- -CGGCGGCUu--GUCGCGcu----CGCG--UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 49234 0.73 0.202367
Target:  5'- cGCgGCCGAacGCAGCGCcaucaGCGCGCAc -3'
miRNA:   3'- -CGgCGGCU--UGUCGCGcucg-CGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 18915 0.78 0.084382
Target:  5'- cGCgCGCCGcGACGGCGCGGGCgagauGCugGCGg -3'
miRNA:   3'- -CG-GCGGC-UUGUCGCGCUCG-----CGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 17214 0.75 0.137016
Target:  5'- gGCUG-CGAGCAGCaCGAGCaGCGCGCGu -3'
miRNA:   3'- -CGGCgGCUUGUCGcGCUCG-CGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 20097 0.75 0.156305
Target:  5'- cGCCuaCGAGgGcGCGCGGGUGCugGCGa -3'
miRNA:   3'- -CGGcgGCUUgU-CGCGCUCGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 18791 0.75 0.156305
Target:  5'- aCCGCCGAggACcGCGCGGcgacCGCGCGCAa -3'
miRNA:   3'- cGGCGGCU--UGuCGCGCUc---GCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 25795 0.74 0.17347
Target:  5'- uGCuCGCCGGGCAGCgGCGgugggccggucAGCGC-CGCGg -3'
miRNA:   3'- -CG-GCGGCUUGUCG-CGC-----------UCGCGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 12714 0.73 0.197276
Target:  5'- aGCCGCCGA--AGC-CG-GUGCACGCGc -3'
miRNA:   3'- -CGGCGGCUugUCGcGCuCGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 69587 0.73 0.197276
Target:  5'- aCCGCCuAGCGGCcaaCGGGCGCGCGUc -3'
miRNA:   3'- cGGCGGcUUGUCGc--GCUCGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 46355 0.73 0.197276
Target:  5'- cCCGCCGAcaucgcgugACAGCGuUGGGC-CACGCGg -3'
miRNA:   3'- cGGCGGCU---------UGUCGC-GCUCGcGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.