miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19505 3' -60.1 NC_004685.1 + 47346 1.1 0.000412
Target:  5'- gGCCGCCGAACAGCGCGAGCGCACGCAg -3'
miRNA:   3'- -CGGCGGCUUGUCGCGCUCGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 23772 0.8 0.060671
Target:  5'- aGCuUGCCGGGCAGCGcCGAGCGCA-GCGa -3'
miRNA:   3'- -CG-GCGGCUUGUCGC-GCUCGCGUgCGU- -5'
19505 3' -60.1 NC_004685.1 + 26643 0.79 0.077734
Target:  5'- cGCCGCacCGAcgagcacaccACAGC-CGAGCGCGCGCAu -3'
miRNA:   3'- -CGGCG--GCU----------UGUCGcGCUCGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 18915 0.78 0.084382
Target:  5'- cGCgCGCCGcGACGGCGCGGGCgagauGCugGCGg -3'
miRNA:   3'- -CG-GCGGC-UUGUCGCGCUCG-----CGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 53639 0.78 0.086716
Target:  5'- gGCCGCCGAuGCGGUauucGCG-GCGCGCGCc -3'
miRNA:   3'- -CGGCGGCU-UGUCG----CGCuCGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 24752 0.77 0.107721
Target:  5'- aGCCGCCGAGCAccacaccguuGCGUucGAuGCGCugGCGg -3'
miRNA:   3'- -CGGCGGCUUGU----------CGCG--CU-CGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 55897 0.76 0.119936
Target:  5'- cCCGCCG-ACGGUGUGGGCcaGCACGCc -3'
miRNA:   3'- cGGCGGCuUGUCGCGCUCG--CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 32223 0.76 0.126517
Target:  5'- cGCCGCCGAagaacgccgACAGCGCGuugaGCGCGUu -3'
miRNA:   3'- -CGGCGGCU---------UGUCGCGCucg-CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 5513 0.76 0.129931
Target:  5'- cGCCGCCGAGCGGCcgggguucuaCGAGCuggucaucgGCACGCu -3'
miRNA:   3'- -CGGCGGCUUGUCGc---------GCUCG---------CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 17214 0.75 0.137016
Target:  5'- gGCUG-CGAGCAGCaCGAGCaGCGCGCGu -3'
miRNA:   3'- -CGGCgGCUUGUCGcGCUCG-CGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 54715 0.75 0.14069
Target:  5'- aGCCcccacCUGAACAGCGCaGAgGCGCACGCc -3'
miRNA:   3'- -CGGc----GGCUUGUCGCG-CU-CGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 36468 0.75 0.144454
Target:  5'- uGCCGCCGAGCAGCuugucgacCGGGUuGCGCGUc -3'
miRNA:   3'- -CGGCGGCUUGUCGc-------GCUCG-CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 20097 0.75 0.156305
Target:  5'- cGCCuaCGAGgGcGCGCGGGUGCugGCGa -3'
miRNA:   3'- -CGGcgGCUUgU-CGCGCUCGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 18791 0.75 0.156305
Target:  5'- aCCGCCGAggACcGCGCGGcgacCGCGCGCAa -3'
miRNA:   3'- cGGCGGCU--UGuCGCGCUc---GCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 38596 0.74 0.160446
Target:  5'- -aUGCCGAAguCGGCGuCGAGCGC-CGCAc -3'
miRNA:   3'- cgGCGGCUU--GUCGC-GCUCGCGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 25795 0.74 0.17347
Target:  5'- uGCuCGCCGGGCAGCgGCGgugggccggucAGCGC-CGCGg -3'
miRNA:   3'- -CG-GCGGCUUGUCG-CGC-----------UCGCGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 3688 0.74 0.17347
Target:  5'- -aCGCCGAcggcuCGGCGCGGGUGUAuCGCGc -3'
miRNA:   3'- cgGCGGCUu----GUCGCGCUCGCGU-GCGU- -5'
19505 3' -60.1 NC_004685.1 + 40733 0.74 0.182669
Target:  5'- aCCGuaCCGAGCGGgGUGAGCGCGC-CAa -3'
miRNA:   3'- cGGC--GGCUUGUCgCGCUCGCGUGcGU- -5'
19505 3' -60.1 NC_004685.1 + 19913 0.74 0.182669
Target:  5'- uGCUGCCGAugA-CGCGGGUGUAuCGCGg -3'
miRNA:   3'- -CGGCGGCUugUcGCGCUCGCGU-GCGU- -5'
19505 3' -60.1 NC_004685.1 + 67077 0.74 0.182669
Target:  5'- cGCUGCCGAGCAgGC-CGAGCgGUAUGCc -3'
miRNA:   3'- -CGGCGGCUUGU-CGcGCUCG-CGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.