miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19505 3' -60.1 NC_004685.1 + 62 0.71 0.272737
Target:  5'- -gCGuUCGAGcCGGgGCGGGCGCGCGCc -3'
miRNA:   3'- cgGC-GGCUU-GUCgCGCUCGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 109 0.71 0.252857
Target:  5'- gGCCGCuaggcgguagcggCGAcCGGCGCGGGCGCG-GCu -3'
miRNA:   3'- -CGGCG-------------GCUuGUCGCGCUCGCGUgCGu -5'
19505 3' -60.1 NC_004685.1 + 191 0.71 0.279412
Target:  5'- uGCgCGCgGGuuuCGGCGCGAcgaGUGCGCGCu -3'
miRNA:   3'- -CG-GCGgCUu--GUCGCGCU---CGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 539 0.72 0.218329
Target:  5'- cCCGCC-AGCAGCGCGcgGGUGUcgACGCAc -3'
miRNA:   3'- cGGCGGcUUGUCGCGC--UCGCG--UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 666 0.66 0.546868
Target:  5'- gGCgGCCGGgucgGCAGCGCGcauaaacuucggcAGCGUGgGUg -3'
miRNA:   3'- -CGgCGGCU----UGUCGCGC-------------UCGCGUgCGu -5'
19505 3' -60.1 NC_004685.1 + 1061 0.68 0.401273
Target:  5'- aGCCGCgGGuugguguugcccgcGCAGUccuGCGGGCGgAUGCGg -3'
miRNA:   3'- -CGGCGgCU--------------UGUCG---CGCUCGCgUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 1320 0.71 0.25348
Target:  5'- cGCaCGCacacuCGGACccGCGCG-GCGCACGCAc -3'
miRNA:   3'- -CG-GCG-----GCUUGu-CGCGCuCGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 1918 0.71 0.279412
Target:  5'- gGCCGCgGuuggcgucAGCGGCGaCGGGCGUggGCAa -3'
miRNA:   3'- -CGGCGgC--------UUGUCGC-GCUCGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 2434 0.66 0.547892
Target:  5'- gGCCGCCGGuggccuguucgACGGCGCG-GUccaaCAUGCc -3'
miRNA:   3'- -CGGCGGCU-----------UGUCGCGCuCGc---GUGCGu -5'
19505 3' -60.1 NC_004685.1 + 2872 0.66 0.497549
Target:  5'- uGCgGCCGGu--GCGCacGGCGCugGCc -3'
miRNA:   3'- -CGgCGGCUuguCGCGc-UCGCGugCGu -5'
19505 3' -60.1 NC_004685.1 + 3181 0.73 0.207572
Target:  5'- gGCCGCCaa--GGCGCGGGagGCGCGCc -3'
miRNA:   3'- -CGGCGGcuugUCGCGCUCg-CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 3291 0.68 0.421752
Target:  5'- uGCCGUCGGGCcGcCGUGuGCGCAuCGUc -3'
miRNA:   3'- -CGGCGGCUUGuC-GCGCuCGCGU-GCGu -5'
19505 3' -60.1 NC_004685.1 + 3688 0.74 0.17347
Target:  5'- -aCGCCGAcggcuCGGCGCGGGUGUAuCGCGc -3'
miRNA:   3'- cgGCGGCUu----GUCGCGCUCGCGU-GCGU- -5'
19505 3' -60.1 NC_004685.1 + 3716 0.66 0.547892
Target:  5'- nGCCGaguaCGGGCuGGCGC-AGCGcCACGUc -3'
miRNA:   3'- -CGGCg---GCUUG-UCGCGcUCGC-GUGCGu -5'
19505 3' -60.1 NC_004685.1 + 4199 0.67 0.440063
Target:  5'- gGgUGCCGAACuGCuuGAGCGCcuucuCGCAc -3'
miRNA:   3'- -CgGCGGCUUGuCGcgCUCGCGu----GCGU- -5'
19505 3' -60.1 NC_004685.1 + 4451 0.67 0.491643
Target:  5'- uGCCGCUac-CGGCacaaacgucagcguuGCGGGUGCAUGCGc -3'
miRNA:   3'- -CGGCGGcuuGUCG---------------CGCUCGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 5513 0.76 0.129931
Target:  5'- cGCCGCCGAGCGGCcgggguucuaCGAGCuggucaucgGCACGCu -3'
miRNA:   3'- -CGGCGGCUUGUCGc---------GCUCG---------CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 5967 0.68 0.430851
Target:  5'- -gCGCCGAcuACGauccGCGCGuGCGgACGCu -3'
miRNA:   3'- cgGCGGCU--UGU----CGCGCuCGCgUGCGu -5'
19505 3' -60.1 NC_004685.1 + 6540 0.66 0.546868
Target:  5'- -aCGCCG-ACGGC-CGAGCugauccuggagguGCugGCAg -3'
miRNA:   3'- cgGCGGCuUGUCGcGCUCG-------------CGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 7835 0.66 0.517459
Target:  5'- aUCGCUGcGCAGCGCGAG-GUGCcCAa -3'
miRNA:   3'- cGGCGGCuUGUCGCGCUCgCGUGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.