miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19554 5' -53.4 NC_004686.1 + 15055 0.66 0.795464
Target:  5'- -cGCaCGCUCAAUGCUuuUGACGcUCCa- -3'
miRNA:   3'- uuCG-GUGAGUUGCGG--ACUGUuAGGcg -5'
19554 5' -53.4 NC_004686.1 + 9548 0.66 0.795464
Target:  5'- aGGGCaCGUUCAuACGCCUGAgCGgcGUCUGCa -3'
miRNA:   3'- -UUCG-GUGAGU-UGCGGACU-GU--UAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 23293 0.66 0.795464
Target:  5'- -uGCCGCaccUCccGCGCCUGACGAcaggacaagcaaUCCGa -3'
miRNA:   3'- uuCGGUG---AGu-UGCGGACUGUU------------AGGCg -5'
19554 5' -53.4 NC_004686.1 + 12128 0.66 0.782376
Target:  5'- -uGCCGCaacggcgggcaguuUCGGCGCC-GGCGGUcaggCCGCg -3'
miRNA:   3'- uuCGGUG--------------AGUUGCGGaCUGUUA----GGCG- -5'
19554 5' -53.4 NC_004686.1 + 42600 0.66 0.775212
Target:  5'- gGGGCUugUCuuCGCCgggGAUAAUgCCaGCg -3'
miRNA:   3'- -UUCGGugAGuuGCGGa--CUGUUA-GG-CG- -5'
19554 5' -53.4 NC_004686.1 + 37504 0.66 0.775212
Target:  5'- cGGCCACgugUAGCGCgCUucGGCGAUaCGCa -3'
miRNA:   3'- uUCGGUGa--GUUGCG-GA--CUGUUAgGCG- -5'
19554 5' -53.4 NC_004686.1 + 20254 0.67 0.754338
Target:  5'- -cGCUGCUCGuugaaaACGCCUGA----CCGCa -3'
miRNA:   3'- uuCGGUGAGU------UGCGGACUguuaGGCG- -5'
19554 5' -53.4 NC_004686.1 + 1718 0.67 0.743698
Target:  5'- -uGCUugUUGGCGCgaggGAgAGUCCGCg -3'
miRNA:   3'- uuCGGugAGUUGCGga--CUgUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 33650 0.67 0.743698
Target:  5'- cGAGCCGUUUGACaccuCCUGGCcuUCCGCu -3'
miRNA:   3'- -UUCGGUGAGUUGc---GGACUGuuAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 24336 0.67 0.73294
Target:  5'- -cGCCACcggCAGCGgCgGACAAggcgCCGUg -3'
miRNA:   3'- uuCGGUGa--GUUGCgGaCUGUUa---GGCG- -5'
19554 5' -53.4 NC_004686.1 + 3540 0.67 0.722075
Target:  5'- -cGCCGCguUCAGgGCCgcGGCAcgCUGCa -3'
miRNA:   3'- uuCGGUG--AGUUgCGGa-CUGUuaGGCG- -5'
19554 5' -53.4 NC_004686.1 + 38820 0.67 0.710017
Target:  5'- cGGCCACUacgucaaCGACGCCgcccGCAagAUCUGCu -3'
miRNA:   3'- uUCGGUGA-------GUUGCGGac--UGU--UAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 33158 0.67 0.700077
Target:  5'- uAGCCAC-CAACGCCacACAAaCCGg -3'
miRNA:   3'- uUCGGUGaGUUGCGGacUGUUaGGCg -5'
19554 5' -53.4 NC_004686.1 + 17223 0.67 0.700077
Target:  5'- -cGUUAUUCGGaucucUGCCUGAgGAUCUGCg -3'
miRNA:   3'- uuCGGUGAGUU-----GCGGACUgUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 21238 0.67 0.700077
Target:  5'- -cGCgGCgcggaaCAACGCCUGACcacccuuagCCGCg -3'
miRNA:   3'- uuCGgUGa-----GUUGCGGACUGuua------GGCG- -5'
19554 5' -53.4 NC_004686.1 + 38405 0.68 0.688968
Target:  5'- -cGCUGCUCAuCGCCgcgGGCAucAUCgGCc -3'
miRNA:   3'- uuCGGUGAGUuGCGGa--CUGU--UAGgCG- -5'
19554 5' -53.4 NC_004686.1 + 19950 0.68 0.688968
Target:  5'- cGGCCAUgcccugagCGACGaUCUGGuCGAUCUGCg -3'
miRNA:   3'- uUCGGUGa-------GUUGC-GGACU-GUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 39662 0.68 0.655343
Target:  5'- --uCCACgaCAACGCC--ACGAUCCGCu -3'
miRNA:   3'- uucGGUGa-GUUGCGGacUGUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 34073 0.68 0.644075
Target:  5'- aAGGCCGC-CAACGgCUGGucCGAUCCa- -3'
miRNA:   3'- -UUCGGUGaGUUGCgGACU--GUUAGGcg -5'
19554 5' -53.4 NC_004686.1 + 44008 0.69 0.610243
Target:  5'- cAAGCCACUCggUGaUCUcuaGACAGucUCCGUg -3'
miRNA:   3'- -UUCGGUGAGuuGC-GGA---CUGUU--AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.